View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16371_high_2 (Length: 626)

Name: NF16371_high_2
Description: NF16371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16371_high_2
NF16371_high_2
[»] chr1 (1 HSPs)
chr1 (18-607)||(7225926-7226551)


Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Original strand, 7225926 - 7226551
Alignment:
Q  18 atatacactaatggatgccatacatgtgagtaacaaaagttggaaaaattatgaggtaaattagtcaacaacaaacaacaaaagtggagagttgggtgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7225926 atatacactaatggatgccatacatgtgagtaacaaaagttggaaaagttatgaggtaaattagtcaacaacaaacaacaaaagtggagagttgggtgag 7226025  T
Q  118 actgtgtttcttcttttgtcagtttctgaaactggaagcaatgatattgtcccnnnnnnnnagcatatatttatgactttaannnnnnn-gaatcttaga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||        ||||||||||    
T  7226026 actgtgtttcttcttttgtcagtttctgaaactggaagcaatgatattgtcccttttttttagcatatatttatgactttaattttctttgaatcttaga 7226125  T
Q  217 tatgtcattcagcagccagagattttgtcttcctt----------------------tatttgtttcactgtttcccataagaaggaaatatgcatgtag 294  Q
    |||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||    
T  7226126 tatgtcattcagcagccagagattttgtcttccttagtttggaatttgttttttttttatttgtttcactgtttcccataagaaggaaatatgcatgtag 7226225  T
Q  295 aaaaactttg-------------acggcagacacttaatttccgagcacattttatacgatttcaaagtttctctagttaaataaacgcacatgtatatg 381  Q
    ||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7226226 aaaaactttgacatttgaatttgacggcagacacttaatttccgagcacattttatacgatttcaaagtttctctagttaaataaacgcacatgtatatt 7226325  T
Q  382 ttgcataaaacttcagaaagcattatacatatttttcataatgttgttttctactaaccatgtctctaaatatatgacctattgcctcaaaacaaaaata 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7226326 ttgcataaaacttcagaaagcattatacatatttttcataatgttgttttctactaaccatgtctctaaatatatgacctattgcctcaaaacaaaaata 7226425  T
Q  482 tatgacctattgaaaacttctcattcttatagttatacgactcattcaaatttacagtgttattaatattttaaacaacaaataatatgatagaaaaaat 581  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7226426 tatgacctactgaaaacttctcattcttatagttatacgactcattcaaatttacagtgttattaatattttaaacaacaaataatatgatagaaaagat 7226525  T
Q  582 gaatcaatgttctttcctaaactgtt 607  Q
    |||||||| |||| ||||||| ||||    
T  7226526 gaatcaattttctctcctaaagtgtt 7226551  T

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