View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16371_low_3 (Length: 468)
Name: NF16371_low_3
Description: NF16371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16371_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 51350157 - 51350572
Alignment:
| Q |
14 |
agaatatcacagtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaactcacc-taaatgc |
112 |
Q |
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| T |
51350157 |
agaatatcacagtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaattcaccataaatgc |
51350256 |
T |
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| Q |
113 |
gaatgtgcactcatgatgatgatggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagat |
212 |
Q |
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| T |
51350257 |
gaatgtgcactcatagtgat---ggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagat |
51350353 |
T |
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| Q |
213 |
atctctgcattaattgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacat |
312 |
Q |
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| T |
51350354 |
atctctgcattaattgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacat |
51350453 |
T |
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| Q |
313 |
ttactccaacctgaatttaaaattgaaattggagagacttatgactctatttcaccctccaattcttgaccgtgacaaccagcaccttcaagaacaatta |
412 |
Q |
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| T |
51350454 |
ttactccaacctgaatttaaaattgaaattgaagagacttatgactctatttcaccctccaattcttgactgtgacaaccagcaccttcaagaacaatta |
51350553 |
T |
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| Q |
413 |
caaaataataagtatatga |
431 |
Q |
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| T |
51350554 |
caaaataataagtatatga |
51350572 |
T |
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