View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16371_low_6 (Length: 243)
Name: NF16371_low_6
Description: NF16371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16371_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 36726948 - 36727073
Alignment:
| Q |
16 |
aaaaagacataaagaagatatggaatcactatatatgtgccgtcaaccctattgggaaaatcttgtgctatgcattattctgagcataaatcaataagct |
115 |
Q |
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| T |
36726948 |
aaaaagacataaagaagatatggaatcactatatatgtgccgtcaaccctattgggaaaatcttgtgctatgcattattctgagcataaatcaataagct |
36727047 |
T |
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| Q |
116 |
gataacttatctatgtattatttctt |
141 |
Q |
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| T |
36727048 |
gataacttatctatgtattatttctt |
36727073 |
T |
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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 36727097 - 36727181
Alignment:
| Q |
159 |
gagttagttaataatattcatttagctttttcaaaataaataaaagcttaacattttgccttcagtcagttcagtggcatcattc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36727097 |
gagttagttaataatattcatttagctttttcaaaataaataaaagcttaacattttgccttcagtcagttcagtggcatcattc |
36727181 |
T |
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