View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16372_high_5 (Length: 246)
Name: NF16372_high_5
Description: NF16372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16372_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27840180 - 27840410
Alignment:
| Q |
1 |
ctataatgccaacaaatgtcgtgacggaaaaccttggttaacgaatccgttatcatgcattaaatctatgccaacatgctcaaatgatacnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27840180 |
ctataatgccaacaaatgtcttgacggaaaacctttgttaacgaatccgttatcatgcattaaatctatgccaacatgctcaaatgatacttttttgttt |
27840279 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnngactaatacttgaaattcatgtgtttaatacaattggagtacttgttattcttagagaagtaaacggtcttacagtactgacagt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27840280 |
ttgcactttttctttgactaatacttgaaattcatgtgtttaatacaattggagtacttgttattcttagagaagtaaacggtcttacagtactgacagt |
27840379 |
T |
|
| Q |
201 |
tatcacaataaatcctaagtcgtctaactat |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
27840380 |
tatcacaataaatcctaagtcgtctaactat |
27840410 |
T |
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