View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16372_low_3 (Length: 319)
Name: NF16372_low_3
Description: NF16372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16372_low_3 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 36 - 301
Target Start/End: Complemental strand, 13596767 - 13596502
Alignment:
| Q |
36 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaataggaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13596767 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcagctagaaatagaaaaaaacaatctcctcgatacagtctttcgacaaatcacat |
13596668 |
T |
|
| Q |
136 |
atgttttaactgttgatactgatatatcaaatatctagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
235 |
Q |
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|||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13596667 |
atgttttaactgctgatactcatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
13596568 |
T |
|
| Q |
236 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaatgtatactcgatc |
301 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13596567 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaaagtatactcgatc |
13596502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 37 - 281
Target Start/End: Complemental strand, 22917242 - 22916996
Alignment:
| Q |
37 |
taaccaagagacacttacaaaagttgataatatt-cccttgatctcatcttgaaataggaaaaa-gcaatctcctcgatacagtctttcgacaaatcaca |
134 |
Q |
| |
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||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||| || ||||| |||||| || | ||||||| |||||| |||||||| |
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| T |
22917242 |
taaccaagaaacacttacaaaagttgatattatttcccttgatctcagcttgaaaaagaaaaaaagcaatcgccccaatacagtgtttcgagaaatcaca |
22917143 |
T |
|
| Q |
135 |
tatgttttaactgttgatactgatatatcaaatatctagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatca |
234 |
Q |
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||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22917142 |
tatgttttaactgctcatattcatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactctagtaattattcaacaatca |
22917043 |
T |
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| Q |
235 |
tataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22917042 |
tataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
22916996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 36 - 301
Target Start/End: Complemental strand, 29693237 - 29692989
Alignment:
| Q |
36 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaataggaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||| |
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| T |
29693237 |
ttaaccaagagacacttacaaaagttgataatattcccttcatctcagcttgaaatagaaaaaagcaat-----------------tcgacaaatcacat |
29693155 |
T |
|
| Q |
136 |
atgttttaactgttgatactgatatatcaaatatctagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
235 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29693154 |
atgttttaactgctgatactcatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
29693055 |
T |
|
| Q |
236 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaatgtatactcgatc |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29693054 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaatgtatactcgatc |
29692989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 281
Target Start/End: Complemental strand, 22721029 - 22720784
Alignment:
| Q |
36 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaataggaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
135 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| || || ||||||| || |||| |||||| || | ||||| | |||||||||||||||| |
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| T |
22721029 |
ttaaccaagaaacacttacaaaagttgatatttttcccttggtcccagcttgaaaaagaaaaatgcaatcaccccaatacaatgtttcgacaaatcacat |
22720930 |
T |
|
| Q |
136 |
atgttttaactgttgatactgatatatcaaatatctagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
235 |
Q |
| |
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|||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22720929 |
atgttttaactgctcatactcatatatcaaatatttagactatcaaactataattaaggtttgaataaatagaaaactccagtaattattcaacaatcat |
22720830 |
T |
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| Q |
236 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22720829 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
22720784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 25730854 - 25730756
Alignment:
| Q |
184 |
tataattagggtttgaataaatagaaaactccagtaa-ttattcaacaatcatataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25730854 |
tataattagggtttgaataaatagaaaactctagtaaattattcaacaatcatataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
25730756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 25730978 - 25730852
Alignment:
| Q |
36 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaataggaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
135 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||||||||||||||| ||||||| || ||||||||||| || | ||||||| |||||||||||||||| |
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| T |
25730978 |
ttaaccaagaaacacttacaaaaattgatattattcccttgatctcagcttgaaaaagaaaaaagcaatcgccccaatacagtgtttcgacaaatcacat |
25730879 |
T |
|
| Q |
136 |
atgttttaactgttgatactgatatat |
162 |
Q |
| |
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||| |||||||| | ||||| |||||| |
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| T |
25730878 |
atggtttaactgctcatactcatatat |
25730852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 6490464 - 6490359
Alignment:
| Q |
171 |
tagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcatataaccttagatataaattgagttgatgatttcaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
6490464 |
tagactatcaaactataattagggttttaataaatagaaaacttcagtagttgttcaacaatc--ttaacctttgatataaattgagttgatgatttcaa |
6490367 |
T |
|
| Q |
271 |
gttcgcat |
278 |
Q |
| |
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||| |||| |
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|
| T |
6490366 |
gtttgcat |
6490359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 8606 - 8655
Alignment:
| Q |
120 |
tttcgacaaatcacatatgttttaactgttgatactgatatatcaaatat |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||| ||||||||||||| |
|
|
| T |
8606 |
tttcgacaaatcacatatgttttaactgctcacactcatatatcaaatat |
8655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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