View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16372_low_4 (Length: 290)
Name: NF16372_low_4
Description: NF16372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16372_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 38744373 - 38744615
Alignment:
| Q |
15 |
ggacaggtgaatttgtggcattatctatatgccacttgaacattttattattgtatataataattctggtagcctgcagatatatgaagattgcagatat |
114 |
Q |
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| T |
38744373 |
ggacaggtgaatttgtggcattatctatatgccacttgaacattttattattgtatataataattctggaagcctgca-----------------gatat |
38744455 |
T |
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| Q |
115 |
taaaggaattaattaaaagtattatttcaacacatgttattttattaagaaaaaggcatatatgatagagcaacttgagggatgtaatttgcggcaggat |
214 |
Q |
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| T |
38744456 |
taaaggaattaattaaaagtattattttaacacatgttattttattaagaaaaaggcatatatgatagagcaacttgagggatgtaatttgcggcaggat |
38744555 |
T |
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| Q |
215 |
gtgtctgacatgatgattgtgatcggtaaaacaaaaccggcaaattgtgacatttcatat |
274 |
Q |
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| T |
38744556 |
gtgtctgacatgatgattgtgttcggtaaaacaaaagcggcaaattgtgacatttcatat |
38744615 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 38740531 - 38740622
Alignment:
| Q |
55 |
cattttattattgtatataataattctggtagcctgcagatatatgaaga--ttgcagatattaaaggaattaattaaaagtattatttcaa |
144 |
Q |
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| T |
38740531 |
cattttattattgtgtaaaatgattctggaagcctgcaaatatatgaagattttagagatactaaaggaattaattaaaagtattacttcaa |
38740622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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