View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16373_high_1 (Length: 658)
Name: NF16373_high_1
Description: NF16373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16373_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 2 - 640
Target Start/End: Complemental strand, 5606648 - 5606010
Alignment:
| Q |
2 |
ttctgaaaagcaccatcaataacaataggagacgattgttcaatcggatagtcaatggcatcagaagatccattaattccatactccaaagttggtgatt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5606648 |
ttctgaaaagcaccatcaataacaataggagacgattgttcaatcggatagtcaatggcatcagaagatccattaactccatactccaaagttggcgatt |
5606549 |
T |
|
| Q |
102 |
gttgagatgcatcaattatggagttgaaagtgaccacatttggctttattcctttccccatcattgctataagcaacataatagaagactccattaaacc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5606548 |
gttgagatgcatcaattatggagttgaaagtgaccacatttggctttattcctttctccatcattgccataagcaacataatagaagactccattaaacc |
5606449 |
T |
|
| Q |
202 |
gtttttgcatagtgtatctatgattgcactataaaagacgacatcaatctccaatcttgccatcttgaactctctataaacatccatcgcttcctgaaac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606448 |
gtttttgcatagtgtatctatgattgcactataaaagacgacgtcaatctccaatcttgccatcttgaactctctataaacatccatcgcttcctgaaac |
5606349 |
T |
|
| Q |
302 |
atttcacctttagtgtacatatcgatcattgtagagtaagttagcgtatttggatatatattccgagccttcatctcctcaaatagtcttctaacttcat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606348 |
atttcacctttagtgtacatatcgatcattgtagagtaagttagcgtatttggatatatattccgagccttcatctcctcaaatagtcttctaacttcat |
5606249 |
T |
|
| Q |
402 |
catacatgccatgcttgccatacccggacaaaagagcattgtaggttactacatctctattgattccgcttctctccatctctttgcacttctcaatagc |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606248 |
catacatgccatgcttgccatacccggacaaaagagcattgtaggttactacatctctattgattccgcttctctccatctctttgcacttctcaatagc |
5606149 |
T |
|
| Q |
502 |
ttcatcaagattgccgagcttctcgtagattccgatgagtgtgttataggacactctatcaagacaaacagatcggagcttcatttcttcatacaggttt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5606148 |
ttcatcaagattgccgagcttctcgtagattccgacgagtgtgttataggacactctatcaagacaaacagatcggagcttcatttcttcatacaggttt |
5606049 |
T |
|
| Q |
602 |
agggcgtcttccaagaggttggccttggcatagccatcc |
640 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5606048 |
agggcgtcttccaagaggttggccttggcatagccatcc |
5606010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 631
Target Start/End: Original strand, 5594264 - 5594893
Alignment:
| Q |
2 |
ttctgaaaagcaccatcaataacaataggagacgattgttcaatcggatagtcaatggcatcagaagatccattaattccatactccaaagttggtgatt |
101 |
Q |
| |
|
||||||||||||||||| |||| |||| |||| |||||||| | ||||| |||| ||| | ||||| |||| || ||||| |||| |||||| |||| |
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|
| T |
5594264 |
ttctgaaaagcaccatcgataagcatagaagacaattgttcagttggatactcaacggcttgtgaagaaccatgaaccccatattccagagttggcgatt |
5594363 |
T |
|
| Q |
102 |
gttgagatgcatcaattatggagttgaaagtgaccacatttggctttattcctttccccatcattgctataagcaacataatagaagactccattaaacc |
201 |
Q |
| |
|
|| || |||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
5594364 |
gtctggaggcatcaattatggagttgaaagtgacaacatttggcttgattcctttctctatcattgcaataagcaacataatagaagactccactaaacc |
5594463 |
T |
|
| Q |
202 |
gtttttgcatagtgtatctatgattgcactataaaagacgacatcaatctccaatcttgccatcttgaactctctataaacatccatcgcttcctgaaac |
301 |
Q |
| |
|
||||||||||||| |||||| |||| | |||||||||| ||||||| ||||||| |||| ||||||| ||| ||||||||||||| |||||||||||| |
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|
| T |
5594464 |
atttttgcatagtgaatctataattgaagtataaaagacaacatcaacctccaattgtgccttcttgaaatctttataaacatccattgcttcctgaaac |
5594563 |
T |
|
| Q |
302 |
atttcacctttagtgtacatatcgatcattgtagagtaagttagcgtatttggatatatattccgagccttcatctcctcaaatagtcttctaacttcat |
401 |
Q |
| |
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||| | ||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
5594564 |
attcctcctttagtgtaaacatcaatcattgtagagtaagttagcgtatttggatatatgttccaagccttcatctcttcaaatagtcttctaacttcat |
5594663 |
T |
|
| Q |
402 |
catacatgccatgcttgccatacccggacaaaagagcattgtaggttactacatctctattgattccgcttctctccatctctttgcacttctcaatagc |
501 |
Q |
| |
|
|||||||||||| | |||| || ||||||||||| ||||| || ||||| |||||||| || ||||| | ||||||||||||||||| | |||| || |
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|
| T |
5594664 |
catacatgccatacctgccgtatccggacaaaagtgcattataagttacaacatctcttttcattccacaactctccatctctttgcattgaccaatggc |
5594763 |
T |
|
| Q |
502 |
ttcatcaagattgccgagcttctcgtagattccgatgagtgtgttataggacactctatcaagacaaacagatcggagcttcatttcttcatacaggttt |
601 |
Q |
| |
|
|||||||| | ||||||||| | |||||||||| | ||||||||||||||||||||||| | ||| |||||| |||||||||||||| |||| ||| |
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|
| T |
5594764 |
ttcatcaaacctaccgagcttcgcatagattccgaccattgtgttataggacactctatcaacagaaatagatcgaagcttcatttcttcgtacaaattt |
5594863 |
T |
|
| Q |
602 |
agggcgtcttccaagaggttggccttggca |
631 |
Q |
| |
|
||||| |||||||||||||| ||||||||| |
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|
| T |
5594864 |
agggcatcttccaagaggttagccttggca |
5594893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 6623938 - 6623864
Alignment:
| Q |
108 |
atgcatcaattatggagttgaaagtgaccacatttggctttattcctttccccatcattgctataagcaacataa |
182 |
Q |
| |
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||||||||||| ||||||||||||| |||| ||||||||| |||| |||||| |||||||| ||||| ||||||| |
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|
| T |
6623938 |
atgcatcaattttggagttgaaagtcaccaaatttggcttgattcgtttccctatcattgcaataaggaacataa |
6623864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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