View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16373_low_1 (Length: 658)

Name: NF16373_low_1
Description: NF16373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16373_low_1
NF16373_low_1
[»] chr7 (2 HSPs)
chr7 (2-640)||(5606010-5606648)
chr7 (2-631)||(5594264-5594893)
[»] chr6 (1 HSPs)
chr6 (108-182)||(6623864-6623938)


Alignment Details
Target: chr7 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 2 - 640
Target Start/End: Complemental strand, 5606648 - 5606010
Alignment:
Q  2 ttctgaaaagcaccatcaataacaataggagacgattgttcaatcggatagtcaatggcatcagaagatccattaattccatactccaaagttggtgatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  5606648 ttctgaaaagcaccatcaataacaataggagacgattgttcaatcggatagtcaatggcatcagaagatccattaactccatactccaaagttggcgatt 5606549  T
Q  102 gttgagatgcatcaattatggagttgaaagtgaccacatttggctttattcctttccccatcattgctataagcaacataatagaagactccattaaacc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  5606548 gttgagatgcatcaattatggagttgaaagtgaccacatttggctttattcctttctccatcattgccataagcaacataatagaagactccattaaacc 5606449  T
Q  202 gtttttgcatagtgtatctatgattgcactataaaagacgacatcaatctccaatcttgccatcttgaactctctataaacatccatcgcttcctgaaac 301  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5606448 gtttttgcatagtgtatctatgattgcactataaaagacgacgtcaatctccaatcttgccatcttgaactctctataaacatccatcgcttcctgaaac 5606349  T
Q  302 atttcacctttagtgtacatatcgatcattgtagagtaagttagcgtatttggatatatattccgagccttcatctcctcaaatagtcttctaacttcat 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5606348 atttcacctttagtgtacatatcgatcattgtagagtaagttagcgtatttggatatatattccgagccttcatctcctcaaatagtcttctaacttcat 5606249  T
Q  402 catacatgccatgcttgccatacccggacaaaagagcattgtaggttactacatctctattgattccgcttctctccatctctttgcacttctcaatagc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5606248 catacatgccatgcttgccatacccggacaaaagagcattgtaggttactacatctctattgattccgcttctctccatctctttgcacttctcaatagc 5606149  T
Q  502 ttcatcaagattgccgagcttctcgtagattccgatgagtgtgttataggacactctatcaagacaaacagatcggagcttcatttcttcatacaggttt 601  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5606148 ttcatcaagattgccgagcttctcgtagattccgacgagtgtgttataggacactctatcaagacaaacagatcggagcttcatttcttcatacaggttt 5606049  T
Q  602 agggcgtcttccaagaggttggccttggcatagccatcc 640  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5606048 agggcgtcttccaagaggttggccttggcatagccatcc 5606010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 631
Target Start/End: Original strand, 5594264 - 5594893
Alignment:
Q  2 ttctgaaaagcaccatcaataacaataggagacgattgttcaatcggatagtcaatggcatcagaagatccattaattccatactccaaagttggtgatt 101  Q
    ||||||||||||||||| ||||  |||| |||| |||||||| | ||||| |||| ||| |  ||||| |||| ||  ||||| |||| |||||| ||||    
T  5594264 ttctgaaaagcaccatcgataagcatagaagacaattgttcagttggatactcaacggcttgtgaagaaccatgaaccccatattccagagttggcgatt 5594363  T
Q  102 gttgagatgcatcaattatggagttgaaagtgaccacatttggctttattcctttccccatcattgctataagcaacataatagaagactccattaaacc 201  Q
    ||   || |||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||    
T  5594364 gtctggaggcatcaattatggagttgaaagtgacaacatttggcttgattcctttctctatcattgcaataagcaacataatagaagactccactaaacc 5594463  T
Q  202 gtttttgcatagtgtatctatgattgcactataaaagacgacatcaatctccaatcttgccatcttgaactctctataaacatccatcgcttcctgaaac 301  Q
     ||||||||||||| |||||| |||| | |||||||||| ||||||| |||||||  |||| ||||||| ||| ||||||||||||| ||||||||||||    
T  5594464 atttttgcatagtgaatctataattgaagtataaaagacaacatcaacctccaattgtgccttcttgaaatctttataaacatccattgcttcctgaaac 5594563  T
Q  302 atttcacctttagtgtacatatcgatcattgtagagtaagttagcgtatttggatatatattccgagccttcatctcctcaaatagtcttctaacttcat 401  Q
    ||| | ||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||    
T  5594564 attcctcctttagtgtaaacatcaatcattgtagagtaagttagcgtatttggatatatgttccaagccttcatctcttcaaatagtcttctaacttcat 5594663  T
Q  402 catacatgccatgcttgccatacccggacaaaagagcattgtaggttactacatctctattgattccgcttctctccatctctttgcacttctcaatagc 501  Q
    |||||||||||| | |||| || ||||||||||| ||||| || ||||| |||||||| || ||||| |  ||||||||||||||||| |   |||| ||    
T  5594664 catacatgccatacctgccgtatccggacaaaagtgcattataagttacaacatctcttttcattccacaactctccatctctttgcattgaccaatggc 5594763  T
Q  502 ttcatcaagattgccgagcttctcgtagattccgatgagtgtgttataggacactctatcaagacaaacagatcggagcttcatttcttcatacaggttt 601  Q
    ||||||||   | ||||||||| | ||||||||||  | ||||||||||||||||||||||| | ||| |||||| |||||||||||||| ||||  |||    
T  5594764 ttcatcaaacctaccgagcttcgcatagattccgaccattgtgttataggacactctatcaacagaaatagatcgaagcttcatttcttcgtacaaattt 5594863  T
Q  602 agggcgtcttccaagaggttggccttggca 631  Q
    ||||| |||||||||||||| |||||||||    
T  5594864 agggcatcttccaagaggttagccttggca 5594893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 6623938 - 6623864
Alignment:
Q  108 atgcatcaattatggagttgaaagtgaccacatttggctttattcctttccccatcattgctataagcaacataa 182  Q
    ||||||||||| ||||||||||||| |||| ||||||||| |||| |||||| |||||||| ||||| |||||||    
T  6623938 atgcatcaattttggagttgaaagtcaccaaatttggcttgattcgtttccctatcattgcaataaggaacataa 6623864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University