View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16375_high_12 (Length: 238)
Name: NF16375_high_12
Description: NF16375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16375_high_12 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 46314379 - 46314601
Alignment:
| Q |
16 |
cataaccaaatccgaaggtgcaccaattctccgatcacagatcccgacgaaatcaccttttctaatcaacggcaccgcccaatccaccactgaaggagga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46314379 |
cataaccaaatccgaaggtgcaccaattctccgatcacagatcccgacgaaatcaccttttctaatcaacggcaccgcccaatccaccactgaaggagga |
46314478 |
T |
|
| Q |
116 |
ctataattaacatcaatcgcatttcttccactgataatctccaataacatgatcccaaaactgaacacatcactcttcgcgctaagatcctccggtgcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46314479 |
ctataattaacatcaatcgcatttcttccactgataatctccaataacaagatcccaaaactgaacacatcactcttcgcgctaagatcctccggtgcaa |
46314578 |
T |
|
| Q |
216 |
gatagcatggatcaagataccct |
238 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46314579 |
gatagcatggatcaagataccct |
46314601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 15171979 - 15171879
Alignment:
| Q |
92 |
gcccaatccaccactgaaggaggactataattaacatcaatcgcatttcttccactgataatctccaataacatgatcccaaaactgaacacatcactct |
191 |
Q |
| |
|
||||||||||| || |||||||| |||| ||||||||| || ||||||||||| ||||||||||| |||| ||||||||||| || |||||| ||| |
|
|
| T |
15171979 |
gcccaatccacaacagaaggaggtgaataagcaacatcaatagcttttcttccactaataatctccaacaacaaaatcccaaaactaaaaacatcaatct |
15171880 |
T |
|
| Q |
192 |
t |
192 |
Q |
| |
|
| |
|
|
| T |
15171879 |
t |
15171879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University