View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16375_high_3 (Length: 390)
Name: NF16375_high_3
Description: NF16375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16375_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 37290670 - 37290262
Alignment:
| Q |
1 |
tatcgaaaacttcacacgcttgtttaaaatatttgatttcatcttaaccttcgagttcctaggaaaatgtttgaagtatgtctaaaaggcttttacttct |
100 |
Q |
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| T |
37290670 |
tatcgaaaacttcacacgcttgtttaaaatatttgatttcatcttaaccttcgagttcctaggaaaatgtttgaagtatgtctaaaaggcttttacttct |
37290571 |
T |
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| Q |
101 |
caaaagcaaaagcttagttgtgttaacagtacatcaagatatcataatcaaggtttttaagaaaggtctatagttgggttgtggtttatcaagtctccgc |
200 |
Q |
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| T |
37290570 |
caaaagcaaaagcttagttgtgttaacagtacatgaagatatcataatcaaggtttttaagaaaggtctatagttgggttgtggtttatcaagtctccgc |
37290471 |
T |
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| Q |
201 |
aaccgctatttagaccacaatatgctgtgattctatgtaatatcaataatcgtgacattaacacaaagactaccacgatttaaaacggttattatcgaat |
300 |
Q |
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| T |
37290470 |
aaccgctatttagaccacaatatgctgtgattctacgtaatatcaataatcgtgacattaacacaaagactaccatgatttaaaacggttattatcgaat |
37290371 |
T |
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| Q |
301 |
aataag-------------------cacaattttaatagatttgatttgagtgagttactaatactagaataataacctgctaaagcatcaagaagtgtg |
381 |
Q |
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| T |
37290370 |
aataagcacatgcaaatgacattagcacaattttaatagatttgatttgagtgagttactaatactataataataacctgctaaagcatcaagaagtgtg |
37290271 |
T |
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| Q |
382 |
gattttcca |
390 |
Q |
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| T |
37290270 |
gattttcca |
37290262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 390
Target Start/End: Original strand, 37347942 - 37347975
Alignment:
| Q |
357 |
acctgctaaagcatcaagaagtgtggattttcca |
390 |
Q |
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| T |
37347942 |
acctgctaaagcatcaagaagtgtagattttcca |
37347975 |
T |
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