View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16375_high_6 (Length: 336)
Name: NF16375_high_6
Description: NF16375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16375_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 26783506 - 26783188
Alignment:
| Q |
1 |
gtggaggcatttcggcttctggaagttgcaatgcagcaatctgcaatggataccagaactggtagttatccaaacaagcccctatactctattgtattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26783506 |
gtggaggcatttcggcttctggaagttgcaatgcagcaatctgcaatggataccagaactggtagttatccaaacaagcccctatactctattgtattcc |
26783407 |
T |
|
| Q |
101 |
accaaataaaactatatatcagactgaatccttttatcttcacaggaactattgacatggatcttataactactggtgtttcggcaagcgaaaggatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26783406 |
accaaataaaactatatatcagactgaatccttttatcttcacaggaactattgacatggatcttataactactggtgtttcggcaagcgaaaggatgag |
26783307 |
T |
|
| Q |
201 |
gcgagaaagtttgattcaagacacccgcaacatgatcatggagaagatgcaaattgggggacgttccatgcgattattagaggtattaccattctttcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26783306 |
gcgagaaagtttgattcaagacacccgcaacatgatcatggagaagatgcaaattgggggacgttccatgcgattattagaggtattaccattctttcta |
26783207 |
T |
|
| Q |
301 |
aaaccattcagtatagatt |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26783206 |
aaaccattcagtatagatt |
26783188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University