View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16375_low_11 (Length: 244)

Name: NF16375_low_11
Description: NF16375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16375_low_11
NF16375_low_11
[»] chr7 (4 HSPs)
chr7 (1-244)||(17825741-17825984)
chr7 (1-244)||(17848754-17848997)
chr7 (5-65)||(15664889-15664949)
chr7 (1-65)||(15676719-15676783)
[»] scaffold0289 (3 HSPs)
scaffold0289 (1-65)||(5211-5275)
scaffold0289 (1-65)||(14044-14108)
scaffold0289 (17-65)||(17769-17817)
[»] chr1 (10 HSPs)
chr1 (1-65)||(14522267-14522331)
chr1 (1-65)||(14504387-14504451)
chr1 (2-65)||(15037424-15037487)
chr1 (1-65)||(14468208-14468272)
chr1 (1-65)||(14483156-14483220)
chr1 (1-65)||(15011405-15011469)
chr1 (2-65)||(15017520-15017583)
chr1 (1-65)||(14532388-14532452)
chr1 (2-51)||(15032871-15032920)
chr1 (1-65)||(15002512-15002576)
[»] chr8 (2 HSPs)
chr8 (2-63)||(17027296-17027357)
chr8 (2-63)||(17557788-17557849)
[»] scaffold0400 (1 HSPs)
scaffold0400 (5-65)||(6893-6953)
[»] scaffold0365 (1 HSPs)
scaffold0365 (5-65)||(7537-7597)
[»] chr5 (1 HSPs)
chr5 (1-53)||(37027184-37027236)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 17825741 - 17825984
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagattttgactaccaagggtgttccttcgagccatgtattct 100  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  17825741 tgtggcttgaataatattctcatacaccattttgtcatcaaaactccatatggtaaatagattttgagtatcaagggtgttccttcgagccatgtattct 17825840  T
Q  101 cgcatggttgactttttgcagagatgcgagaatatgaaacaaactaatactagtattagagttccaattgcaagtggcaaaacaatcactaagactttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17825841 cgcatggttgactttttgcagagatgcgagaatatgaaacaaactaatactagtattagagttccaattgcaagtggcaaaacaatcaataagactttct 17825940  T
Q  201 tatgattatgagatctagtaccgcttgatgttgggcaaggctcc 244  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  17825941 tatgattatgagagctagtaccgcttgatgttgggcaaggctcc 17825984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17848997 - 17848754
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagattttgactaccaagggtgttccttcgagccatgtattct 100  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||  |||||||||||||||| ||||| |    
T  17848997 tgtggcttcaataatactctcatacaccatttttccatcaaaactccatatggtaaatagattttgagtatcaaatgtgttccttcgagccaggtattgt 17848898  T
Q  101 cgcatggttgactttttgcagagatgcgagaatatgaaacaaactaatactagtattagagttccaattgcaagtggcaaaacaatcactaagactttct 200  Q
      | ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  17848897 atcgtggttgaatttttgcagagatgcaagaatttgaaacaaactaatactagtattagagttccaattgcaagtggtaaaacaatcaataagactttct 17848798  T
Q  201 tatgattatgagatctagtaccgcttgatgttgggcaaggctcc 244  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||    
T  17848797 tatgattatgagatctagtaccgcttgcttttgagcaaggctcc 17848754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 15664889 - 15664949
Alignment:
Q  5 gcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  15664889 gcttcaataatgttctcatacaccattttcccatcaaaactccatattgtaaatacatttt 15664949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15676719 - 15676783
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  15676719 tgtggcttcaattatgttctcatacaccattttcccatcaaaactccatattgtaaatacatttt 15676783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5211 - 5275
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  5211 tgtggcttcaataatgttctcatacaccattttcccatcaaaactccatatagtaaatacatttt 5275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14044 - 14108
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  14044 tgtggcttcaataatgttctcatacaccattttcccatcaaaactccatatagtaaatacatttt 14108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 17769 - 17817
Alignment:
Q  17 ttctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  17769 ttctcatacaccattttcccatcaaaactccatattgtaaatacatttt 17817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14522267 - 14522331
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||    
T  14522267 tgtggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt 14522331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14504451 - 14504387
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||| | |||||| |||||||||||||| ||||||||||||||||| | |||||||||||    
T  14504451 tgtggcttctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagatttt 14504387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 15037487 - 15037424
Alignment:
Q  2 gtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||   |||||||||||    
T  15037487 gtggcttcgataatgttctcatacaccattttgccatcaaagctccatatttcaaatagatttt 15037424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14468272 - 14468208
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||||| ||| || |||||||| ||||| ||||||||||||||||| | |||||||||||    
T  14468272 tgtggcttcaacaatgttttcatacacaatttttccatcaaaactccatattgaaaatagatttt 14468208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14483220 - 14483156
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||| ||||| ||||| ||||||||||| | ||||||||||||||| | |||||||||||    
T  14483220 tgtggcttcgataatgttctcgtacaccatttttcaatcaaaactccatattgaaaatagatttt 14483156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15011469 - 15011405
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||| || || |||||||||||||||||||||||||| ||||||||   |||||||||||    
T  15011469 tgtggcttcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagatttt 15011405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 15017583 - 15017520
Alignment:
Q  2 gtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    |||||||| || || |||||||||||||||||||||||||| ||||||||   |||||||||||    
T  15017583 gtggcttcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagatttt 15017520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14532388 - 14532452
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||| |||||  |||| ||||||||||| |||||||| |||||||| | |||||||||||    
T  14532388 tgtggcttcgataatggtctcgtacaccatttttccatcaaagctccatattgcaaatagatttt 14532452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 15032920 - 15032871
Alignment:
Q  2 gtggcttcaataatattctcatacaccattttgccatcaaaactccatat 51  Q
    |||||||| || || ||||| |||||||||||||||||||| ||||||||    
T  15032920 gtggcttcgattatgttctcgtacaccattttgccatcaaagctccatat 15032871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15002576 - 15002512
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||||| || || ||||| ||||||||||| |||||||| ||||||||   |||||||||||    
T  15002576 tgtggcttcgattatgttctcgtacaccatttttccatcaaagctccatatttcaaatagatttt 15002512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 17027357 - 17027296
Alignment:
Q  2 gtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatt 63  Q
    |||||||| ||||| ||||||||||||||||| |||||||| |||||||  | |||||||||    
T  17027357 gtggcttcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagatt 17027296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 17557849 - 17557788
Alignment:
Q  2 gtggcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatt 63  Q
    |||||||| ||||| ||||||||||||||||| |||||||| |||||||  | |||||||||    
T  17557849 gtggcttcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagatt 17557788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 6953 - 6893
Alignment:
Q  5 gcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||| ||| ||||||||||||| ||| |||||||| |||||||| | |||||||||||    
T  6953 gcttcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagatttt 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 7597 - 7537
Alignment:
Q  5 gcttcaataatattctcatacaccattttgccatcaaaactccatatggtaaatagatttt 65  Q
    ||||||| ||| ||||||||||||| ||| |||||||| |||||||| | |||||||||||    
T  7597 gcttcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagatttt 7537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37027236 - 37027184
Alignment:
Q  1 tgtggcttcaataatattctcatacaccattttgccatcaaaactccatatgg 53  Q
    |||||||||||| ||||| ||||| |||||||| |||||| ||||||||||||    
T  37027236 tgtggcttcaatgatattttcataaaccatttttccatcataactccatatgg 37027184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University