View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16375_low_4 (Length: 358)
Name: NF16375_low_4
Description: NF16375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16375_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 15783604 - 15783933
Alignment:
| Q |
17 |
acattgttctacacagaagccattcatggaaaacgaaaataacagtaagaggaagaatactaccaacaccatcaacgatttccacgacgatatactaact |
116 |
Q |
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| T |
15783604 |
acattgttctacacagaagccattcatggaaaacgaaaataatagtaagaggaagaatactaccaacaccatcaacgatttccacgacgatatactaact |
15783703 |
T |
|
| Q |
117 |
catataatctcttttctaccgatcaaagatgctttcaggacaacccttctttcaaagagatgggttcaattgtgccactcactccccgttctccacatca |
216 |
Q |
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| T |
15783704 |
catataatctcttttctaccgatcaaagatgctttcaggacaacccttctttcaaagagatgggttctattgtgccgctcactccccgttctccacatca |
15783803 |
T |
|
| Q |
217 |
acgatgatggcgtgaaaaatgaaaaggacttgattcagtttcgtcaaatgttggatgccgttatgttttccccacgctctcaggaccgtaccctcaaatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
15783804 |
acgatgatggcgtgaaaaatgaaaaggacttgattcagttccgtcaaatgttggatgccgttatgttttccccacgctctcaggacagtacccacaaatc |
15783903 |
T |
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| Q |
317 |
ttttaaactcacgtgttgttcaatcctctg |
346 |
Q |
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| T |
15783904 |
ttttaaactcacgtgttgttcaatcctctg |
15783933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 296
Target Start/End: Complemental strand, 19970664 - 19970455
Alignment:
| Q |
87 |
atcaacgatttccacgacgatatactaactcatataatctcttttctaccgatcaaagatgctttcaggacaacccttctttcaaagagatgggttcaat |
186 |
Q |
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| T |
19970664 |
atcaacgacttcccagacgatatactaactcacattctctcttttcttccaatcagagacgctttcagaaccaccgtgctttccaagacgtgggtctcat |
19970565 |
T |
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| Q |
187 |
tgtgccactcactccccgttctccacatcaacgatgatggcgtgaaaaatgaaaaggacttgattcagtttcgtcaaatgttggatgccgttatgttttc |
286 |
Q |
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| T |
19970564 |
tgtgctactcactcccgattctccacttcgacaataaagacgtgaacaatgtaaaggaacagattcagttccatcaaatgttgaatgccgttatgttctc |
19970465 |
T |
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| Q |
287 |
cccacgctct |
296 |
Q |
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| T |
19970464 |
cccacgctct |
19970455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 273
Target Start/End: Complemental strand, 1348879 - 1348708
Alignment:
| Q |
102 |
gacgatatactaactcatataatctcttttctaccgatcaaagatgctttcaggacaacccttctttcaaagagatgggttcaattgtgccactcactcc |
201 |
Q |
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||||| ||||||||||| || ||||||||||| | ||||||| |||||||| || ||| ||||||| ||||||||| | | ||| | |||| |||| | |
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| T |
1348879 |
gacgagatactaactcacattatctcttttctcacattcaaagacgctttcagaactaccattctttctaagagatggttcccattattccacacacttc |
1348780 |
T |
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| Q |
202 |
ccgttctccacatcaacgatgatggcgtgaaaaatgaaaaggacttgattcagtttcgtcaaatgttggatg |
273 |
Q |
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| T |
1348779 |
cgattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttcgtcaaatgttggatg |
1348708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 20110844 - 20110938
Alignment:
| Q |
87 |
atcaacgatttccacgacgatatactaactcatataatctcttttctaccgatcaaagatgctttcaggacaacccttctttcaaagagatgggt |
181 |
Q |
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|||||||| |||| ||||||||||||||||| || |||||||||| || ||||||| ||||||| || ||| |||| ||||||| |||||| |
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| T |
20110844 |
atcaacgacttcccagacgatatactaactcacatcgtctcttttcttccattcaaagacgctttcaaaaccaccgttctctcaaagaaatgggt |
20110938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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