View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16375_low_5 (Length: 341)

Name: NF16375_low_5
Description: NF16375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16375_low_5
NF16375_low_5
[»] chr5 (4 HSPs)
chr5 (65-291)||(12372588-12372809)
chr5 (66-259)||(6802500-6802687)
chr5 (212-291)||(6803387-6803471)
chr5 (212-291)||(12373491-12373575)
[»] chr1 (1 HSPs)
chr1 (65-266)||(38233726-38233916)
[»] scaffold0878 (2 HSPs)
scaffold0878 (162-291)||(2042-2176)
scaffold0878 (225-269)||(2808-2852)
[»] chr2 (2 HSPs)
chr2 (162-259)||(27891391-27891488)
chr2 (225-269)||(27892120-27892164)
[»] chr7 (2 HSPs)
chr7 (212-291)||(43961201-43961281)
chr7 (65-112)||(18788290-18788338)
[»] chr4 (1 HSPs)
chr4 (214-291)||(7261333-7261411)
[»] chr6 (3 HSPs)
chr6 (236-291)||(34995623-34995678)
chr6 (65-112)||(34995686-34995734)
chr6 (212-242)||(34996529-34996559)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 65 - 291
Target Start/End: Complemental strand, 12372809 - 12372588
Alignment:
Q  65 gtttaagttaaaatgaattttatgcaggccaaactcttttatactctcatgagtcatgaaggcaccctacccatgtccaaagagtcatgataatctcaaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||||||||||||||||     ||    
T  12372809 gtttaagttaaaatgaattttatgcaggccaaactcttttatactctcatcagtcatgataaaaccctacccatgtccaaagagtcatgataa-----aa 12372715  T
Q  165 ctcttttatactctcaattgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaagaataat 264  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  12372714 ctcttttatactctcaattgacagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaagaatttt 12372615  T
Q  265 tttttgggttttatgaagatgatgaag 291  Q
    |||||||||||||||||||||||||||    
T  12372614 tttttgggttttatgaagatgatgaag 12372588  T

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Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 6802687 - 6802500
Alignment:
Q  66 tttaagttaaaatgaattttatgcaggccaaactcttttatactctcatgagtcatgaaggcaccctacccatgtccaaagagtcatgataatctcaaac 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||     |||    
T  6802687 tttaagttaaaatgaattttatgcaggccaaactcttttatactctcatgagtcatgataaaaccctacccatgtccaaagagtcatgataa-----aac 6802593  T
Q  166 tcttttatactctcaattgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaaga 259  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6802592 tcttttatactctgaatcgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccg-aaaggaaaggaaaattgagagaaga 6802500  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 6803387 - 6803471
Alignment:
Q  212 ttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaagaa-----taattttttgggttttatgaagatgatgaag 291  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||     |  ||||||||||||||||||||||||||||    
T  6803387 ttatttttgtttgtttgatccgaaaaggaaaagaaaattgagagaagaattttttttttttttgggttttatgaagatgatgaag 6803471  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 12373491 - 12373575
Alignment:
Q  212 ttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaaga-----ataattttttgggttttatgaagatgatgaag 291  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||      |  |||||||| |||||||||||||||||||    
T  12373491 ttatttttgtttgtttgatccgaaaaggaaaggaaaattaagagaagatttttttttttttttggattttatgaagatgatgaag 12373575  T

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Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 65 - 266
Target Start/End: Complemental strand, 38233916 - 38233726
Alignment:
Q  65 gtttaagttaaaatgaattttatgcaggccaaactcttttatactctcatgagtcatgaaggcaccctacccatgtccaaagagtcatgataatctcaaa 164  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||     ||    
T  38233916 gtttaagttaaaatgaattttatgcaggctaaactcttttatactctcatgagtcatgacgacaccctacccatgtccaaagagtcatgataa-----aa 38233822  T
Q  165 ctcttttatactctcaattgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaagaataat 264  Q
     | |||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38233821 gtgttttatactct------agagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaagaataat 38233728  T

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Target: scaffold0878 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 2176 - 2042
Alignment:
Q  162 aaactcttttatactctcaattgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaa---- 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  2176 aaactcttttatactctcaattgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaatttt 2077  T
Q  258 -gaataattttttgggttttatgaagatgatgaag 291  Q
      | |  ||||||||||||||||||||||||||||    
T  2076 ttattttttttttgggttttatgaagatgatgaag 2042  T

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Target: scaffold0878; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 2808 - 2852
Alignment:
Q  225 tttgatccgaaaaggaaaggaaaattgagagaagaataatttttt 269  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||    
T  2808 tttgatacgaaaaggaaaggaaaattgagagaagaatattttttt 2852  T

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Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 27891488 - 27891391
Alignment:
Q  162 aaactcttttatactctcaattgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaaga 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27891488 aaactcttttatactctcaattgagagaagatgatgaagttaaaatgaatttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaaga 27891391  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 27892120 - 27892164
Alignment:
Q  225 tttgatccgaaaaggaaaggaaaattgagagaagaataatttttt 269  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||    
T  27892120 tttgattcgaaaaggaaaggaaaattgagagaagaatattttttt 27892164  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 43961281 - 43961201
Alignment:
Q  212 ttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaaga-ataattttttgggttttatgaagatgatgaag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||    
T  43961281 ttatttttgtttgtttgatccgaaaaggaaaggaaaattgagagaagatttttttttttgggttttatgaagatgatgaag 43961201  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 18788290 - 18788338
Alignment:
Q  65 gtttaagttaaaa-tgaattttatgcaggccaaactcttttatactctc 112  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  18788290 gtttaagttaaaaatgaattttatggaggccaatctcttttatactctc 18788338  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 7261333 - 7261411
Alignment:
Q  214 atttttgtttgtttgatccgaaaaggaaaggaaaattgagagaaga-ataattttttgggttttatgaagatgatgaag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||| |||||||||||||||||||||    
T  7261333 atttttgtttgtttgatccgaaaaggaaaggaaaattgagagaagatttattttttttggttttatgaagatgatgaag 7261411  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 34995678 - 34995623
Alignment:
Q  236 aaggaaaggaaaattgagagaagaataattttttgggttttatgaagatgatgaag 291  Q
    ||||||||||||||||||||||||||  || ||| |||||||||||||||||||||    
T  34995678 aaggaaaggaaaattgagagaagaatttttgttttggttttatgaagatgatgaag 34995623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 34995734 - 34995686
Alignment:
Q  65 gtttaagttaaaa-tgaattttatgcaggccaaactcttttatactctc 112  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  34995734 gtttaagttaaaaatgaattttatggaggccaacctcttttatactctc 34995686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 34996529 - 34996559
Alignment:
Q  212 ttatttttgtttgtttgatccgaaaaggaaa 242  Q
    |||||||||||||||||||||||||||||||    
T  34996529 ttatttttgtttgtttgatccgaaaaggaaa 34996559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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