View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16375_low_9 (Length: 291)
Name: NF16375_low_9
Description: NF16375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16375_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 7723762 - 7723485
Alignment:
| Q |
1 |
tgtcgctgcgccggcggcagacgttgctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaaattgaaac |
100 |
Q |
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| T |
7723762 |
tgtcgctgtgccagcggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgcataatgactgtaattcc-attcaaattgaaac |
7723664 |
T |
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| Q |
101 |
tatcaaaagattgaaataaagttatatatttggaatgtatatatttagagtannnnnnnnacctttgggcctcgagggccgttcctccaaagcggtgtgg |
200 |
Q |
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| T |
7723663 |
tatcaaaagattgaaataaagttatatata-gttatat-tatatttagagtattttttttacctttgggcctcgagggccgttcctccaaagcggtgtgg |
7723566 |
T |
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| Q |
201 |
aggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
281 |
Q |
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| T |
7723565 |
aggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
7723485 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 32956020 - 32956086
Alignment:
| Q |
26 |
gctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaa |
92 |
Q |
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| T |
32956020 |
gctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaa |
32956086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 32956322 - 32956410
Alignment:
| Q |
161 |
acctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
249 |
Q |
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| T |
32956322 |
accttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgtt |
32956410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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