View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16376_high_2 (Length: 346)
Name: NF16376_high_2
Description: NF16376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16376_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 96 - 321
Target Start/End: Complemental strand, 44151867 - 44151644
Alignment:
| Q |
96 |
tttggatcaagctggacatgacaaaagtacgatagtttgatgttcaagtgaaacattaccgcggcaacaaattggcacgtccgatgggagattagtttga |
195 |
Q |
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| T |
44151867 |
tttggatcaagcaggacatgacaaa-gcacgttagtttgatgttcaagtgaaacattaccgcggcaacaaattggcacgtccgatgggagattagtttga |
44151769 |
T |
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| Q |
196 |
gatagccgttgtcaagtttccagtaaccagaaaccgttaatcgtacnnnnnnnnnnnnnnnnnnnnnnnntatggctcattccaaaagaaggaatgccaa |
295 |
Q |
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| T |
44151768 |
g-tagtcattgtcaagattctagtaaccagaaaccgttaatcgtacaaaaaatcaaatataaaaacaaaatatggctcattccaaaagaaggaatgccaa |
44151670 |
T |
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| Q |
296 |
ttaaaccaacaatttgaatgatgatg |
321 |
Q |
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||||||||||||||||||||| |||| |
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| T |
44151669 |
ttaaaccaacaatttgaatgaagatg |
44151644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44152015 - 44151917
Alignment:
| Q |
1 |
ttgtgggcaaaacagatattcttcctaacatcattagccaacatcaaaatgctttcattccaggtctactcattacaaacaatgctcttattgtctttg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44152015 |
ttgtgggcaaaacagatattcttcctaacatcattagccaacatcaaaatgctttcattccaggtctactcattacaaacaatgctcttattgtctttg |
44151917 |
T |
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