View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16376_low_4 (Length: 268)
Name: NF16376_low_4
Description: NF16376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16376_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 12703562 - 12703329
Alignment:
| Q |
14 |
ggaagttggtaaagagagaagattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaccaacctgtctcttctcctcaagagcctta |
113 |
Q |
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| T |
12703562 |
ggaagttgctaatgggtgaagattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaacaacctgtctcttcacctcaagagcctta |
12703463 |
T |
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| Q |
114 |
ttcctctgacagtactcaaagcagcaagaggaagaggtgcaccttgttacctaatcaagatcatggtgggaatagatcgcttagaaacttgttaactgca |
213 |
Q |
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| T |
12703462 |
ttcctctgacagtactcaaagcagcaagagaaagaggtgcaccttgttacctaatcaagatcatggtg-----agaaagcttagaaacttgttaactgca |
12703368 |
T |
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| Q |
214 |
ttgtttattactgtgttgtttaaaccttgtttacaaaat |
252 |
Q |
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| T |
12703367 |
ttgtttattgctgtgttgtttaaaccttgtttacaaaat |
12703329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 8207427 - 8207220
Alignment:
| Q |
34 |
gattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaccaacctgtctcttctcctcaagagccttattcctctgacagtactcaaa |
133 |
Q |
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| T |
8207427 |
gattatgagaatgaacaactcgaaaggagtggtataaccgaggaacttgaacaacctgtctgttctcctcaagagccctactcttcggatagttctcaaa |
8207328 |
T |
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| Q |
134 |
gcagcaagaggaagaggtgcaccttgttacctaatcaagatcatggtgggaatagatcgcttagaaacttgttaactgcattgtttattactgtgttgtt |
233 |
Q |
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| T |
8207327 |
gcagtaagaggaaacggggcaccgagtttcctagccaagatcatggtg-----agaaagcttagaaaccagtcaattacattgttcattactgtgttgtt |
8207233 |
T |
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| Q |
234 |
taaaccttgttta |
246 |
Q |
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| T |
8207232 |
taacccttgttta |
8207220 |
T |
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