View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16377_low_4 (Length: 262)

Name: NF16377_low_4
Description: NF16377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16377_low_4
NF16377_low_4
[»] chr5 (4 HSPs)
chr5 (73-240)||(40934566-40934733)
chr5 (79-244)||(38838451-38838617)
chr5 (74-244)||(40571188-40571344)
chr5 (1-29)||(40934785-40934813)
[»] chr1 (2 HSPs)
chr1 (73-240)||(24279335-24279502)
chr1 (74-244)||(19912695-19912851)
[»] chr3 (2 HSPs)
chr3 (73-244)||(20010539-20010709)
chr3 (73-244)||(18558549-18558719)
[»] chr6 (4 HSPs)
chr6 (73-244)||(22620640-22620810)
chr6 (79-244)||(8671164-8671330)
chr6 (113-244)||(11233559-11233690)
chr6 (1-29)||(11233768-11233796)
[»] chr8 (3 HSPs)
chr8 (79-244)||(3301470-3301636)
chr8 (73-244)||(26906968-26907139)
chr8 (73-240)||(36283017-36283183)
[»] chr2 (2 HSPs)
chr2 (127-244)||(8166271-8166388)
chr2 (74-107)||(8166394-8166427)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 40934733 - 40934566
Alignment:
Q  73 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40934733 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 40934634  T
Q  173 ccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctac 240  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40934633 ccgagtaaaaacaaaaatataataagctatcaaagaataagtcagttctcaatatacaattgtcctac 40934566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 79 - 244
Target Start/End: Complemental strand, 38838617 - 38838451
Alignment:
Q  79 tttcttctacctatttttcttatttgttgtgctcttttctctcataatt-aagaaattggaactaactcgcccattatcctatttattcgccaatccgag 177  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38838617 tttcttctacctatttttcttatttgttgtgcttttttctctcataatttaagaaattggaactaactcgcccattatcctatttatttgccaatccgag 38838518  T
Q  178 taaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38838517 taaaaacaaaaatataataggctatcaaagaataagtcggttctcaatatacaattgtcctacacgt 38838451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 40571188 - 40571344
Alignment:
Q  74 ccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaatc 173  Q
    ||||||||||||||||||||||||||||||||||             |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  40571188 ccttatttcttctacctatttttcttatttgttg-------------cataat-aagaaattggaactaactcgcccattatcctatctattcgccaatc 40571273  T
Q  174 cgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40571274 cgagtaaagacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgt 40571344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40934813 - 40934785
Alignment:
Q  1 ttaatcaaaaagtggaaatatattgtcac 29  Q
    |||||||||||||||||||||||||||||    
T  40934813 ttaatcaaaaagtggaaatatattgtcac 40934785  T

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Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 24279335 - 24279502
Alignment:
Q  73 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 172  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24279335 gccttatttcttctacctatttttcttattttttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 24279434  T
Q  173 ccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctac 240  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24279435 ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctac 24279502  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 19912695 - 19912851
Alignment:
Q  74 ccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaatc 173  Q
    ||||||||||||||||||||||||||||||||||             |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  19912695 ccttatttcttctacctatttttcttatttgttg-------------cataat-aagaaattggaactaactcgcccattatcctatctattcgccaatc 19912780  T
Q  174 cgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19912781 cgagtaaagacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgt 19912851  T

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Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 20010539 - 20010709
Alignment:
Q  73 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  20010539 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataat-aagaaattggaactaactcgcccattatcctatctattcgccaat 20010637  T
Q  173 ccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20010638 ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgt 20010709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 18558719 - 18558549
Alignment:
Q  73 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 172  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  18558719 gccttatttcttctacctatttttcttatttgttgtactcttttctctcataat-aagaaattggaactaactcgcccattatcctatctattcgccaat 18558621  T
Q  173 ccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  18558620 ccgagtaaaaacaaaaatataataggctatcgaagaataagttagttctcaatatacaattgtcctacacgt 18558549  T

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Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 22620640 - 22620810
Alignment:
Q  73 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  22620640 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataat-aagaaattggaactaactcgctcattatcctatctattcgccaat 22620738  T
Q  173 ccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22620739 ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgt 22620810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 79 - 244
Target Start/End: Complemental strand, 8671330 - 8671164
Alignment:
Q  79 tttcttctacctatttttcttatttgttgtgctcttttctctcataatt-aagaaattggaactaactcgcccattatcctatttattcgccaatccgag 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  8671330 tttcttctacctatttttcttatttgttgtgctcttttctctcataatttaagaaattggaaataactcgcccattatgctatttattcgccaatccgag 8671231  T
Q  178 taaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8671230 taaaaacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 8671164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 244
Target Start/End: Complemental strand, 11233690 - 11233559
Alignment:
Q  113 ttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaatccgagtaaatacaaaaatataataggctatcaaagaataa 212  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||| |||||| |||| |||    
T  11233690 ttttctctcataattaagaatttggaactaactcgcacattatcctacttattcgccaatccgaataaaaacaaaaatataataagctatcgaagagtaa 11233591  T
Q  213 gtcagttctcaatatacaattgtcctacacgt 244  Q
    ||||||||||||||||||||||||||||||||    
T  11233590 gtcagttctcaatatacaattgtcctacacgt 11233559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11233796 - 11233768
Alignment:
Q  1 ttaatcaaaaagtggaaatatattgtcac 29  Q
    |||||||||||||||||||||||||||||    
T  11233796 ttaatcaaaaagtggaaatatattgtcac 11233768  T

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Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 79 - 244
Target Start/End: Complemental strand, 3301636 - 3301470
Alignment:
Q  79 tttcttctacctatttttcttatttgttgtgctcttttctctcataatt-aagaaattggaactaactcgcccattatcctatttattcgccaatccgag 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3301636 tttcttctacctatttttcttatttgttgtgctcttttctctcatattttaagaaattggaactaactcgcccatcatcctatttattcgccaatccgag 3301537  T
Q  178 taaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3301536 taaaaacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 3301470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 26906968 - 26907139
Alignment:
Q  73 gccttatttcttctacctatttttctt-atttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaa 171  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  26906968 gccttatttcttctacctatttttctttatttgttgtgctcttttctctcataat-aagaaattggaactaactcgcccattatcctatctattcgccaa 26907066  T
Q  172 tccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctacacgt 244  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26907067 tccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttctcaatatacaattgtcctacacgt 26907139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 36283017 - 36283183
Alignment:
Q  73 gccttatttcttctacctatttttcttatttgttgtgctcttttctctcataattaagaaattggaactaactcgcccattatcctatttattcgccaat 172  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||    
T  36283017 gccttatttcttctacctatttttcttatttgttgtggtcttttctctcataat-aagaaattggaactaactcgcccattatcctatctgttcgccaat 36283115  T
Q  173 ccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaatatacaattgtcctac 240  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  36283116 ccgagtaaaaacaaaaatataataggctatcgaagaataagtcagttcccaatatacaattgtcctac 36283183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 8166388 - 8166271
Alignment:
Q  127 taagaaattggaactaactcgcccattatcctatttattcgccaatccgagtaaatacaaaaatataataggctatcaaagaataagtcagttctcaata 226  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  8166388 taagaaattggaactaactcgcccattatcctatctattcgccaattcgagtaaagacaaaaatataataggctatcgaagaataagtcagttctcaata 8166289  T
Q  227 tacaattgtcctacacgt 244  Q
    ||||||||||||||||||    
T  8166288 tacaattgtcctacacgt 8166271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 8166427 - 8166394
Alignment:
Q  74 ccttatttcttctacctatttttcttatttgttg 107  Q
    |||||||||||||| |||||||||||||||||||    
T  8166427 ccttatttcttctatctatttttcttatttgttg 8166394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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