View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16377_low_5 (Length: 251)
Name: NF16377_low_5
Description: NF16377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16377_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 47253857 - 47253639
Alignment:
| Q |
18 |
ggaagctgatattcttaagtcattgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgttaatttcaatatct |
117 |
Q |
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| T |
47253857 |
ggaagctgatattcttaagtcattgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgttaatttcaatatct |
47253758 |
T |
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| Q |
118 |
aaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttcagggaatatattgggcctgctactgaggatctaaaggta |
217 |
Q |
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| T |
47253757 |
aaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttcagggaatatattgggcctgctactgaggatctaaaggta |
47253658 |
T |
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| Q |
218 |
aatcgaacagttcattaat |
236 |
Q |
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| T |
47253657 |
aatcgaacagttcattaat |
47253639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 47242571 - 47242452
Alignment:
| Q |
41 |
tgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgttaatttcaatatctaaagcctaattgaaatgaagtta |
140 |
Q |
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| T |
47242571 |
tgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtgaatttgaatatctaaagccttgttgaaatgaagtta |
47242472 |
T |
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| Q |
141 |
attggattaattgtgtttat |
160 |
Q |
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| T |
47242471 |
attggactaattctgtttat |
47242452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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