View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_100 (Length: 238)
Name: NF16378_high_100
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_100 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39902369 - 39902588
Alignment:
| Q |
1 |
aaaatgacaaacgtgaattaactcctgatgagtcaaggg-aataaacattttaaaagggggaagaacaacttccatccatacagaggccaaattattttg |
99 |
Q |
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||||||||||| ||||||||||| ||| | |||||||| ||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
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| T |
39902369 |
aaaatgacaaatgtgaattaacttctgtag-gtcaaggggaataagcattttaaaagggggaggaacaatttccatccatagagaggccaaattattttg |
39902467 |
T |
|
| Q |
100 |
acatgttatttatcaaacccatgataacaataattaaaacaaattatgtcaacagtgataaaaacaaaatccatggtacttatctcattgttattttgac |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39902468 |
acatgttatttatcaaacccat---aacaataattaaaacaaattgtgtcaacagtgataaaaacaaaatccatgttacttatctcattgttattttgac |
39902564 |
T |
|
| Q |
200 |
gtatgattgtagatggtggtttct |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39902565 |
gtatgattgtagatggtggtttct |
39902588 |
T |
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