View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_103 (Length: 228)
Name: NF16378_high_103
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_103 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 14504888 - 14504698
Alignment:
| Q |
16 |
aatactaagaagccagtgaagattgtgatcgtaactacagaatatgtagaaactgatgctatgagttttaagtctgtggtgcagaagctaactggtaagc |
115 |
Q |
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| T |
14504888 |
aatagtaaaaagccagtgaagattgtgattataactacagaatatgttgaaactgatgctatgagttttaagtctgtggtgcagaagctaactggtaagc |
14504789 |
T |
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| Q |
116 |
attcttctgatcgtagtgttgatgatgaagctagagatggtagaaaagctaagagggaaaagcataatttaagtgggtttgatcatgtgcc |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
14504788 |
attcttctgatcgtagtgttgatgatgatgctagagatggtagaaaagctaagagggaaaagcacaatttaagtgggtttgatgatgtgcc |
14504698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 14497235 - 14497130
Alignment:
| Q |
16 |
aatactaagaagccagtgaagattgtgatcgtaactacagaatatgtagaaactgatgctatgagttttaagtctgtggtgcagaagctaactggtaagc |
115 |
Q |
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|||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14497235 |
aatagtaaaaagccagtgaagattgtgattgtaactacagaatatgttgaaactgatgctatgagttttaagtctgtggtgcagaagctaactggtaagc |
14497136 |
T |
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| Q |
116 |
attctt |
121 |
Q |
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| |||| |
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| T |
14497135 |
actctt |
14497130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 29736877 - 29736959
Alignment:
| Q |
31 |
gtgaagattgtgatcgtaactacagaatatgtagaaactgatgctatgagttttaagtctgtggtgcagaagctaactggtaa |
113 |
Q |
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| T |
29736877 |
gtgaagattgtgatcatcaacacacaatatgtagaaactgatgctacaagtttcaaatctgttgtccagaaactgactggtaa |
29736959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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