View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_110 (Length: 218)

Name: NF16378_high_110
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_110
NF16378_high_110
[»] scaffold0391 (1 HSPs)
scaffold0391 (45-199)||(6549-6717)
[»] chr7 (20 HSPs)
chr7 (36-115)||(41519072-41519151)
chr7 (36-125)||(37473639-37473728)
chr7 (36-109)||(45709670-45709743)
chr7 (36-108)||(3174969-3175041)
chr7 (36-108)||(7309398-7309469)
chr7 (36-108)||(45228987-45229059)
chr7 (58-108)||(20335815-20335865)
chr7 (43-119)||(2495805-2495881)
chr7 (36-108)||(9183153-9183225)
chr7 (36-108)||(25590653-25590725)
chr7 (72-108)||(48771980-48772016)
chr7 (36-115)||(15137588-15137667)
chr7 (36-111)||(21558167-21558242)
chr7 (58-124)||(24513823-24513889)
chr7 (36-109)||(22035439-22035512)
chr7 (75-108)||(25132379-25132412)
chr7 (43-108)||(45976892-45976957)
chr7 (36-108)||(5934163-5934235)
chr7 (36-108)||(15905636-15905707)
chr7 (36-108)||(26703167-26703239)
[»] chr2 (17 HSPs)
chr2 (57-124)||(31573624-31573691)
chr2 (36-119)||(5952191-5952274)
chr2 (43-108)||(25637193-25637258)
chr2 (36-109)||(33582014-33582087)
chr2 (36-119)||(3001410-3001493)
chr2 (36-107)||(42222924-42222995)
chr2 (58-124)||(13803521-13803587)
chr2 (58-108)||(28846733-28846783)
chr2 (42-107)||(26545883-26545948)
chr2 (36-108)||(19016073-19016145)
chr2 (44-107)||(4262273-4262335)
chr2 (36-119)||(14780537-14780620)
chr2 (36-109)||(35203345-35203418)
chr2 (66-119)||(40791482-40791535)
chr2 (36-81)||(41504898-41504943)
chr2 (37-109)||(19244150-19244222)
chr2 (36-108)||(29503313-29503384)
[»] scaffold0008 (1 HSPs)
scaffold0008 (43-124)||(49332-49413)
[»] chr6 (10 HSPs)
chr6 (39-112)||(9875241-9875314)
chr6 (42-108)||(30127442-30127508)
chr6 (36-90)||(32250812-32250866)
chr6 (36-108)||(12234469-12234541)
chr6 (36-108)||(33549146-33549218)
chr6 (37-108)||(28841456-28841527)
chr6 (43-108)||(346572-346637)
chr6 (42-91)||(6519138-6519187)
chr6 (43-91)||(168074-168122)
chr6 (36-108)||(12633051-12633123)
[»] chr8 (10 HSPs)
chr8 (36-108)||(968404-968476)
chr8 (43-92)||(31087227-31087276)
chr8 (55-109)||(12281535-12281589)
chr8 (36-109)||(31408084-31408157)
chr8 (45-91)||(35690035-35690081)
chr8 (58-107)||(11928715-11928764)
chr8 (36-105)||(40791857-40791926)
chr8 (36-108)||(6536562-6536634)
chr8 (36-108)||(8485041-8485113)
chr8 (36-108)||(11492035-11492107)
[»] chr1 (16 HSPs)
chr1 (36-124)||(16893420-16893508)
chr1 (36-107)||(2220015-2220086)
chr1 (36-108)||(12587312-12587383)
chr1 (43-119)||(28283562-28283638)
chr1 (36-91)||(18334984-18335039)
chr1 (42-121)||(40814376-40814455)
chr1 (36-119)||(44961796-44961879)
chr1 (58-108)||(52336758-52336808)
chr1 (55-108)||(4566590-4566643)
chr1 (36-89)||(23471047-23471100)
chr1 (58-119)||(51814525-51814586)
chr1 (75-107)||(9117162-9117194)
chr1 (43-91)||(9643778-9643826)
chr1 (37-81)||(16019385-16019429)
chr1 (69-109)||(26232356-26232396)
chr1 (36-108)||(42949254-42949326)
[»] chr4 (17 HSPs)
chr4 (36-109)||(49262646-49262719)
chr4 (43-103)||(32662801-32662861)
chr4 (36-108)||(2184994-2185066)
chr4 (36-108)||(7949416-7949488)
chr4 (36-88)||(30584784-30584836)
chr4 (36-108)||(30938181-30938253)
chr4 (36-108)||(51954156-51954228)
chr4 (42-108)||(13015469-13015535)
chr4 (42-108)||(39509112-39509178)
chr4 (58-108)||(49576878-49576928)
chr4 (36-89)||(18404845-18404898)
chr4 (36-109)||(47386753-47386826)
chr4 (36-108)||(21660106-21660178)
chr4 (36-108)||(21668870-21668942)
chr4 (56-108)||(24124037-24124089)
chr4 (36-108)||(37109313-37109385)
chr4 (36-108)||(38838839-38838911)
[»] scaffold0258 (1 HSPs)
scaffold0258 (36-108)||(15285-15357)
[»] chr5 (9 HSPs)
chr5 (36-108)||(16773849-16773921)
chr5 (36-108)||(29173532-29173604)
chr5 (36-108)||(22020824-22020896)
chr5 (36-124)||(43442222-43442310)
chr5 (42-108)||(12883882-12883948)
chr5 (36-85)||(20495907-20495956)
chr5 (43-92)||(30000174-30000223)
chr5 (75-108)||(30109309-30109342)
chr5 (59-104)||(30700603-30700648)
[»] chr3 (19 HSPs)
chr3 (36-108)||(10499071-10499143)
chr3 (36-108)||(44743817-44743889)
chr3 (36-108)||(51903840-51903912)
chr3 (36-109)||(19154672-19154745)
chr3 (36-108)||(47454579-47454651)
chr3 (36-108)||(52769945-52770017)
chr3 (57-108)||(14186689-14186740)
chr3 (77-115)||(2597223-2597261)
chr3 (42-108)||(30510167-30510233)
chr3 (36-105)||(11090127-11090196)
chr3 (36-108)||(2667904-2667976)
chr3 (36-108)||(4844473-4844545)
chr3 (36-108)||(4870169-4870241)
chr3 (36-108)||(10445101-10445173)
chr3 (36-108)||(10828695-10828767)
chr3 (69-109)||(20501737-20501777)
chr3 (36-92)||(32639003-32639059)
chr3 (36-108)||(45308864-45308936)
chr3 (36-108)||(49397503-49397575)
[»] scaffold0194 (1 HSPs)
scaffold0194 (58-108)||(13030-13080)
[»] scaffold0126 (1 HSPs)
scaffold0126 (58-108)||(25331-25381)
[»] scaffold0118 (1 HSPs)
scaffold0118 (58-124)||(41617-41683)
[»] scaffold0004 (1 HSPs)
scaffold0004 (36-86)||(380308-380358)
[»] scaffold0074 (1 HSPs)
scaffold0074 (43-108)||(45728-45793)
[»] scaffold0471 (1 HSPs)
scaffold0471 (56-108)||(8624-8676)
[»] scaffold0368 (1 HSPs)
scaffold0368 (36-108)||(14927-14999)
[»] scaffold0006 (1 HSPs)
scaffold0006 (57-109)||(162992-163044)


Alignment Details
Target: scaffold0391 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 6549 - 6717
Alignment:
Q  45 aattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa--------------accaacccaaa 130  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||              |||||||||||    
T  6549 aattaacctacttaaattgacatcggagataatcgaacctgaaacttcaagaaggagcacactcttaaatctcaaaccaatatcatcaaaccaacccaaa 6648  T
Q  131 tgagttatgaaaatgtaacttattccgttagacttaatcgaagagtcttgcagaaggaaatagactcct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6649 tgagttatgaaaatgtaacttattccgttagacttaatcgaagagtcttgcagaaggaaatagactcct 6717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 41519072 - 41519151
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatc 115  Q
    ||||| |||||||| || ||  ||||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||    
T  41519072 aagaagctaaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagcacactcttaaatc 41519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 37473728 - 37473639
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaac 125  Q
    ||||| ||||||||||| || |||||||||||  | || ||||||||||||||||||||| ||||||| |||| || ||| |||||||||    
T  37473728 aagaagctaaattaacccacctaaattgacattagggagaatcgaacctgagacctcaaggaggagcaaactcctagatcccaaaccaac 37473639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 45709670 - 45709743
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| |||| ||| || || |||||||  ||||||||||||||||||||||||||| || |||||||||||||    
T  45709670 aagaagctaagttagcccacctaaattggtatcggagataatcgaacctgagacctcgaggaggagcacactct 45709743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 3175041 - 3174969
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||||| |  |||||||| || ||||| |||||||||||||||||| ||| |||||||||||    
T  3175041 aagaagctaaattaacccaactaaattgatattggagagaatcgaacctgagacctcgagatggagcacactc 3174969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 7309469 - 7309398
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||||||||||||| |||||| |||||||| ||||||||| || ||||||||||||    
T  7309469 aagaagctaaattagcccacttaaattgaca-cggagagaatcgaacttgagacctcgaggaggagcacactc 7309398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 45228987 - 45229059
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || |||||||||||||  ||||| |||||||||| | ||||||||||| |||||||||    
T  45228987 aagaagctaaattagcccacttaaattgacactggagagaatcgaacctaaaacctcaagaagaagcacactc 45229059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 20335815 - 20335865
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||||| || |||||||||||||||||| || ||||||||||||    
T  20335815 aaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactc 20335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 2495805 - 2495881
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    |||||||||| | ||||||||| ||  |||||||||||||||||||  | ||| ||||||||||||  |||||||||    
T  2495805 taaattaacccatttaaattgatattagagataatcgaacctgagattttaaggaggagcacactcacaaatctcaa 2495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 9183153 - 9183225
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||||||| || ||  ||||||||| | |||||||||||||||||||| |  || ||||||||||||    
T  9183153 aagaaactaaattagcccacccaaattgacaccagagataatcgaacctgagactttgaggaggagcacactc 9183225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 25590725 - 25590653
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||| ||||||||| || ||| ||||||||| |||||||| || ||||||||||||    
T  25590725 aagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactc 25590653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 48772016 - 48771980
Alignment:
Q  72 gataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48772016 gataatcgaacctgagacctcaaggaggagcacactc 48771980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 15137667 - 15137588
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatc 115  Q
    |||||||||||||| || ||  ||||||||| | |||| |||| ||||||||||||  || |||||||||||| ||||||    
T  15137667 aagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatc 15137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 21558242 - 21558167
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactctta 111  Q
    ||||| ||||||||||| || ||||||| || | |||| |||||||||||||||||  || ||||||||| |||||    
T  21558242 aagaagctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacattctta 21558167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 24513889 - 24513823
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 124  Q
    ||||||||||| | || ||||||||||||||||||||| || || ||||||  ||||||||| ||||    
T  24513889 aaattgacatcagtgaaaatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaa 24513823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 22035512 - 22035439
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| ||||||||  | |||||||||||||  ||||| ||||||||||| | |||| || |||||||||||||    
T  22035512 aagaagctaaattagtccacttaaattgacacaggagagaatcgaacctgggtcctcgaggaggagcacactct 22035439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 25132379 - 25132412
Alignment:
Q  75 aatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||||||||| ||||||||||||||||    
T  25132379 aatcgaacctgagaccttaagaaggagcacactc 25132412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 45976892 - 45976957
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||||||||||||| |||| |||||||  |||| | | |||| ||| ||||||||||||    
T  45976892 taaattaacctacttaaattggcatcagagataaatgaacttaaaaccttaaggaggagcacactc 45976957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 5934235 - 5934163
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||||||  | || |||||||||| | |||  |||||||| ||| |||||||| ||||||||||||    
T  5934235 aagaaactaaattagtccacctaaattgacaccagagggaatcgaacatgaaacctcaaggaggagcacactc 5934163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 15905636 - 15905707
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||||| ||  ||||||||||  | || ||||||||||||||||| ||| ||||||||||||    
T  15905636 aagaagctaaattaacccacccaaattgacattagggagaatcgaacctgagacct-aaggaggagcacactc 15905707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 26703239 - 26703167
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || ||||||| |||  | |||||  |||||||||||||| |||||||||||||||    
T  26703239 aagaatctaaattagcccacctaaattggcattagggataaatgaacctgagacctcgagaaggagcacactc 26703167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 31573624 - 31573691
Alignment:
Q  57 taaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 124  Q
    ||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||| | ||||||||||||    
T  31573624 taaattgacatcgaagagaatcgaacctgagacatcaaggaggagcacactctcagatctcaaaccaa 31573691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 5952274 - 5952191
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    ||||||||||||||||| |||||||||||||||  |||| ||| ||||||| || | ||| |||||| |||||| |||||||||    
T  5952274 aagaaactaaattaacccacttaaattgacatcaaagatgatcaaacctgacactttaaggaggagcccactctcaaatctcaa 5952191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 25637258 - 25637193
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||| || || ||||||| ||||||||| || ||||||||||||||| |||||||||||||||    
T  25637258 taaattagcccacctaaattggcatcggagagaaccgaacctgagacctcgagaaggagcacactc 25637193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 33582087 - 33582014
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| ||||||||  | || |||||||||||  |||| ||||||||||||||||||||| |||||||||||||    
T  33582087 aagaagctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactct 33582014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 3001493 - 3001410
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    ||||| |||||||| || || |||| || || | ||||||||||||||||||| |||||| |||||||||||| || |||||||    
T  3001493 aagaacctaaattagcccacataaactggcaccagagataatcgaacctgagatctcaaggaggagcacactcctagatctcaa 3001410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 42222995 - 42222924
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 107  Q
    ||||| ||||||||||| ||  ||||||||| || ||| |||||||||| |||| |||||||||||||||||    
T  42222995 aagaatctaaattaacccacccaaattgacaccgaagagaatcgaacctaagacttcaagaaggagcacact 42222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 13803587 - 13803521
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 124  Q
    |||||| |||| ||||||||||||||||||||||  || |||||||||||| ||| |||||| ||||    
T  13803587 aaattggcatcagagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaa 13803521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 28846783 - 28846733
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||||| |||||||||||||||||| || || ||||||||||||    
T  28846783 aaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactc 28846733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 26545948 - 26545883
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 107  Q
    ||||||||||| || |||||||| |||| ||| |||| ||| ||||||||| ||||||||||||||    
T  26545948 ctaaattaacccacctaaattgatatcgaagagaatcaaacttgagacctcgagaaggagcacact 26545883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 19016145 - 19016073
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| ||||||||||||| || ||| || |||| ||| ||||||||| || ||||||||||||    
T  19016145 aagaagctaaattagcctacttaaattggcaccggggagaatcaaacttgagacctcgaggaggagcacactc 19016073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 4262273 - 4262335
Alignment:
Q  44 aaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 107  Q
    |||||||||||| |||||||||  |||||| |||||||||||||||||  || |||||||||||    
T  4262273 aaattaacctacctaaattgacc-cggagagaatcgaacctgagaccttgaggaggagcacact 4262335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 14780620 - 14780537
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    ||||| |||||||| || ||| |||||| |||||| ||  ||||||||||||||||  | |||||||||| ||| |||||||||    
T  14780620 aagaagctaaattagcccactcaaattggcatcggggaggatcgaacctgagaccttgaaaaggagcacattctcaaatctcaa 14780537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 35203345 - 35203418
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| ||||||||||| ||||||||||||| |  |||||||||||| |||||| |  || | |||||||||||    
T  35203345 aagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagactttgaggatgagcacactct 35203418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 40791482 - 40791535
Alignment:
Q  66 atcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    ||||| || |||||||| ||||||||  |||||||||||||||| |||||||||    
T  40791482 atcggggagaatcgaacttgagaccttgagaaggagcacactctcaaatctcaa 40791535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 41504898 - 41504943
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaa 81  Q
    ||||| ||||||||||| ||||||||||||| |||||| |||||||    
T  41504898 aagaagctaaattaacccacttaaattgacaccggagagaatcgaa 41504943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 19244222 - 19244150
Alignment:
Q  37 agaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||||||||||| || ||| |||||| || | |||| |||||||||||||||||   | |||||||||||||    
T  19244222 agaaactaaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactct 19244150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 29503384 - 29503313
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||  || ||||||||||||| ||| || |||||||||||||||||  || ||||||||||||    
T  29503384 aagaagctaaatttgcccacttaaattgacaccgg-gagaatcgaacctgagaccttgaggaggagcacactc 29503313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 49413 - 49332
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 124  Q
    |||||||||| ||||||||||||| |||||| |||||||||||| ||||| |  ||||||||||||| ||||| ||| ||||    
T  49413 taaattaacccacttaaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaa 49332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 9875314 - 9875241
Alignment:
Q  39 aaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaa 112  Q
    ||||||||||| |||||||||||||||||| |||| |  |||| ||||||||||||| || |||||||||||||    
T  9875314 aaactaaattagcctacttaaattgacatcagagagagccgaatctgagacctcaaggagaagcacactcttaa 9875241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 30127508 - 30127442
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||||||| ||||||| || |||| | |||||||||||||||||| |  ||||||||||||    
T  30127508 ctaaattaacctacctaaattggcaccggaaagaatcgaacctgagacctcgaagaggagcacactc 30127442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 32250812 - 32250866
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacc 90  Q
    ||||| ||||||||||| |||||||||| || |||||| ||||||||||||||||    
T  32250812 aagaagctaaattaacccacttaaattgtcaccggagagaatcgaacctgagacc 32250866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 12234469 - 12234541
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || |  ||||||||||  ||||| |||||||||||||||||| ||| |||||||||||    
T  12234469 aagaagctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactc 12234541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 33549218 - 33549146
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| |  || ||||||| |||| |||| |||||||||||||||||| || ||||||||||||    
T  33549218 aagaagctaaattagctcacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactc 33549146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 28841527 - 28841456
Alignment:
Q  37 agaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||||| || |  |||||||||| |||||| |||||||| ||||||||  || ||||||||||||    
T  28841527 agaaactaaattagccaatctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacactc 28841456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 346637 - 346572
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||| ||||||||||||||||  || || |||||||| ||||||||| || || |||||||||    
T  346637 taaattagcctacttaaattgacacgggtgagaatcgaacatgagacctcgaggagaagcacactc 346572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 6519138 - 6519187
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacct 91  Q
    ||||||||||| |||||||||| |  ||||||||||||||||| ||||||    
T  6519138 ctaaattaacccacttaaattggcgccggagataatcgaacctaagacct 6519187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 168074 - 168122
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacct 91  Q
    |||||||| | ||||||| ||| || |||||||||||||||||||||||    
T  168074 taaattaatccacttaaactgatattggagataatcgaacctgagacct 168122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 12633123 - 12633051
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||  | |||||||||||||| ||||| |||||||| ||||| ||| |  ||||||||||||    
T  12633123 aagaagctaaattagtccacttaaattgacattggagagaatcgaacatgagatctcgaagaggagcacactc 12633051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 968476 - 968404
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || ||||||| ||||||||| |||||||||||||||||| || ||||||||||||    
T  968476 aagaagctaaattagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactc 968404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 31087227 - 31087276
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctc 92  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  31087227 taaattagcctatttaaattgacaccggagataatcgaacctgagacctc 31087276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 12281589 - 12281535
Alignment:
Q  55 cttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||||||||||||||||| ||||||| |||||||||| || ||| |||||||||    
T  12281589 cttaaattgacatcggagaaaatcgaatctgagacctcgaggaggggcacactct 12281535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 31408084 - 31408157
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| |||||||||||  |||||||||||||  |||| |||||||||||| ||||  || |||||||||||||    
T  31408084 aagaagctaaattaacccccttaaattgacattagagagaatcgaacctgaaaccttgaggaggagcacactct 31408157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 35690035 - 35690081
Alignment:
Q  45 aattaacctacttaaattgacatcggagataatcgaacctgagacct 91  Q
    ||||| |||||||||||||||| | |||| |||||||||||||||||    
T  35690035 aattagcctacttaaattgacaccagagagaatcgaacctgagacct 35690081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 11928715 - 11928764
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 107  Q
    |||||||||||||  | |||||||||||||||||| || |||||||||||    
T  11928715 aaattgacatcggtaagaatcgaacctgagacctcgaggaggagcacact 11928764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 40791857 - 40791926
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcaca 105  Q
    ||||| |||||||| || |||||||||||||   |||| |||||||||| |||| ||||| |||||||||    
T  40791857 aagaagctaaattagcccacttaaattgacactagagaaaatcgaacctaagacttcaaggaggagcaca 40791926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 6536634 - 6536562
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||||| || ||||||| || | |||| ||| |||||||||||||  || ||||||||||||    
T  6536634 aagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactc 6536562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 8485113 - 8485041
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || ||||||| || |||||| |||||||  |||||||||||  ||||||||||||    
T  8485113 aagaagctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactc 8485041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 11492035 - 11492107
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||  |||||||||  | ||| |||||||||| ||||||| |||||||||||||||    
T  11492035 aagaagctaaattagcccacccaaattgacactgaagagaatcgaacctaagacctcgagaaggagcacactc 11492107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 16893508 - 16893420
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 124  Q
    ||||| |||||||| || ||| ||||||||| |||||| |||||||||||||||||| || ||||| ||||||  ||||||||| ||||    
T  16893508 aagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaa 16893420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 2220086 - 2220015
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 107  Q
    |||||||||||||| || | |||||||||||| ||||| |||||||||||||||||| || || ||||||||    
T  2220086 aagaaactaaattagcccatttaaattgacattggagagaatcgaacctgagacctcgaggagaagcacact 2220015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 12587383 - 12587312
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || ||||||| || |||||| |||||||||||||||||| || ||||||||||||    
T  12587383 aagaagctaaattagcccacctaaattg-caccggagagaatcgaacctgagacctcgaggaggagcacactc 12587312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 28283638 - 28283562
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    |||||||  |||| |||||||||| | |||| ||||||||||||||| ||||| | || |||||||| |||||||||    
T  28283638 taaattagactacataaattgacaccagagagaatcgaacctgagacatcaaggaagaacacactctcaaatctcaa 28283562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 18334984 - 18335039
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacct 91  Q
    ||||| |||||||||||||  |||||||||||||| || ||||||||| |||||||    
T  18334984 aagaagctaaattaacctaactaaattgacatcggggaaaatcgaacccgagacct 18335039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 40814376 - 40814455
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaac 121  Q
    |||||||| || |||||||||||||   |||| |||||||||||| |||||||| | |||||||||| | |||| |||||    
T  40814376 ctaaattagcccacttaaattgacactagagagaatcgaacctgaaacctcaaggatgagcacactcctgaatcccaaac 40814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 44961879 - 44961796
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    ||||| |||||||| || ||  |||||||||   |||| ||||||||||||||||   || |||||||||||||||||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaa 44961796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 52336758 - 52336808
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||| | ||||||||||||||||||| || ||| ||||||||||||    
T  52336758 aaattgacaccagagataatcgaacctgagatcttaaggaggagcacactc 52336808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 4566643 - 4566590
Alignment:
Q  55 cttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||||||| |||| ||||||||||||||||   || ||||||||||||    
T  4566643 cttaaattgacatcagagagaatcgaacctgagaccctgaggaggagcacactc 4566590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 23471047 - 23471100
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagac 89  Q
    ||||| |||||||| || ||| ||||||||| |||||| |||||||||||||||    
T  23471047 aagaagctaaattagccaactcaaattgacaccggagagaatcgaacctgagac 23471100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 51814586 - 51814525
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 119  Q
    |||||| || |||||| |||||||||||||||||  || ||||||||||||| | |||||||    
T  51814586 aaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaa 51814525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 9117194 - 9117162
Alignment:
Q  75 aatcgaacctgagacctcaagaaggagcacact 107  Q
    ||||||||||||||||||||| |||||||||||    
T  9117194 aatcgaacctgagacctcaaggaggagcacact 9117162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 9643778 - 9643826
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacct 91  Q
    |||||||||||||  ||||||||| |||||||||| ||| |||||||||    
T  9643778 taaattaacctacaaaaattgacaccggagataattgaatctgagacct 9643826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 16019429 - 16019385
Alignment:
Q  37 agaaactaaattaacctacttaaattgacatcggagataatcgaa 81  Q
    |||| |||||||| || ||||||||||||||| ||||||||||||    
T  16019429 agaagctaaattatcccacttaaattgacatctgagataatcgaa 16019385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 26232356 - 26232396
Alignment:
Q  69 ggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| ||| ||||||||||||||||| |||||||||||||    
T  26232356 ggagagaattgaacctgagacctcaaggaggagcacactct 26232396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 42949254 - 42949326
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || |||||||||| || |||||| |||| ||  ||||||||| || ||||||||||||    
T  42949254 aagaagctaaattagcccacttaaattgtcaccggagagaatcaaatatgagacctcgaggaggagcacactc 42949326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 49262646 - 49262719
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    |||||||||||||| || || ||||||| ||  || || |||||||||||||||||||| ||||||||||||||    
T  49262646 aagaaactaaattagcccacctaaattggcactggggagaatcgaacctgagacctcaacaaggagcacactct 49262719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 32662861 - 32662801
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagca 103  Q
    ||||||| || ||||||||||||| || ||| ||||||||||||||||||||| |||||||    
T  32662861 taaattagcccacttaaattgacaccgaagaaaatcgaacctgagacctcaaggaggagca 32662801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 2184994 - 2185066
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||| |||||  || |||||| ||||||||| ||||||||||||||| |  |||||||||||||||    
T  2184994 aagaagctaaactaaccccctcaaattggcatcggagagaatcgaacctgagactttgagaaggagcacactc 2185066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 7949416 - 7949488
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || |||||||||| | |||| |||||||||||||||||  || ||||||||||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactc 7949488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 30584784 - 30584836
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgaga 88  Q
    |||||||||||||| |  |  ||||||||||||||||||||||||||||||||    
T  30584784 aagaaactaaattagctcatctaaattgacatcggagataatcgaacctgaga 30584836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 30938181 - 30938253
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||| ||||| || ||||||| ||| || || |||||||||||||||||| || ||||||||||||    
T  30938181 aagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactc 30938253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 51954228 - 51954156
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||  ||||||||| ||||||||||| ||||||||||||| || ||||||| ||||    
T  51954228 aagaagctaaattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactc 51954156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 13015535 - 13015469
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||| || |||||||||| | |||| |||||||| |||||| || || ||||||||||||    
T  13015535 ctaaattaacccacctaaattgacacctgagagaatcgaacatgagacttcgaggaggagcacactc 13015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 39509178 - 39509112
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||| || ||||||| ||  || || |||||||||||||||||| || ||||||||||||    
T  39509178 ctaaattaacccacctaaattgccactggggagaatcgaacctgagacctcgaggaggagcacactc 39509112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 49576878 - 49576928
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||| ||||| |||||||||||||||||  || ||||||||||||    
T  49576878 aaattgacattggagagaatcgaacctgagaccttgaggaggagcacactc 49576928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 18404845 - 18404898
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagac 89  Q
    ||||| ||||| ||||| ||||||||||||| |  |||||||||||||||||||    
T  18404845 aagaagctaaactaacccacttaaattgacaccttagataatcgaacctgagac 18404898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 47386753 - 47386826
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| |||||||| || || ||||||||||   |||| ||| |||||||||||||||||||| ||| ||||||    
T  47386753 aagaagctaaattagcccacctaaattgacactagagagaattgaacctgagacctcaagaagaagcgcactct 47386826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 21660106 - 21660178
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||  |||| ||||||||||   ||||||||||||| ||||||||| || | ||||||||||    
T  21660106 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactc 21660178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 21668870 - 21668942
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||  |||| ||||||||||   ||||||||||||| ||||||||| || | ||||||||||    
T  21668870 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactc 21668942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 24124037 - 24124089
Alignment:
Q  56 ttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||| || || |||||||||||||| |||||||||| |||| |||||||    
T  24124037 ttaaattggcaccgaagataatcgaacctcagacctcaaggaggaccacactc 24124089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 37109313 - 37109385
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||| |||||  || |||||| || | |||| |||||||||||||||||  || ||||||||||||    
T  37109313 aagaaactaaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 37109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 38838911 - 38838839
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||||||| || ||  |||||| ||||||||| |||||||||| ||||||  || ||||||| ||||    
T  38838911 aagaaactaaattagcccaccgaaattgccatcggagagaatcgaacctaagaccttgaggaggagcatactc 38838839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 15285 - 15357
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || ||||||| |||| |||| |||||||||||||||||| || ||||||||||||    
T  15285 aagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactc 15357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 16773921 - 16773849
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || ||||||| |||| |||| |||||||||||||||||| || ||||||||||||    
T  16773921 aagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactc 16773849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 29173604 - 29173532
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || |||||||||| | ||||||||||||||||| ||||| || ||||||||||||    
T  29173604 aagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactc 29173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 22020824 - 22020896
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||||||| || || |||||| |||  ||||| ||||||| ||||||| ||||| ||||||||||||    
T  22020824 aagaaactaaattagcccacctaaattaacactggagagaatcgaatctgagacttcaaggaggagcacactc 22020896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 43442310 - 43442222
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 124  Q
    |||||||||||||| || |   ||||||||| | |||| |||||||||||||||||  || ||||||||||||  | ||||||||||||    
T  43442310 aagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaa 43442222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 12883948 - 12883882
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||| ||  ||||||| || ||||| ||| |||| |||||||||||| ||||||||||||    
T  12883948 ctaaattaacccaccaaaattgatattggagagaattgaacatgagacctcaaggaggagcacactc 12883882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 20495907 - 20495956
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctg 85  Q
    ||||| |||||| |||| ||| |||||||||||||||| |||||||||||    
T  20495907 aagaagctaaatcaacccactcaaattgacatcggagaaaatcgaacctg 20495956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 30000223 - 30000174
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctc 92  Q
    |||||||||| |||||||||| |||| |||| | ||||||||||||||||    
T  30000223 taaattaacccacttaaattggcatcagagagagtcgaacctgagacctc 30000174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 30109309 - 30109342
Alignment:
Q  75 aatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||||||||||||| ||||||||||||    
T  30109309 aatcgaacctgagacctcaaggaggagcacactc 30109342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 30700603 - 30700648
Alignment:
Q  59 aattgacatcggagataatcgaacctgagacctcaagaaggagcac 104  Q
    |||||||| | |||||||| ||||||||||||| ||||||||||||    
T  30700603 aattgacaccagagataattgaacctgagaccttaagaaggagcac 30700648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 10499071 - 10499143
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||  |||||||||||||||| ||||||||||||||||||||| | ||||| ||||    
T  10499071 aagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactc 10499143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 44743817 - 44743889
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||||| ||  |||||| ||  |||||||||||||||||||||||| || ||||||||||||    
T  44743817 aagaagctaaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagcacactc 44743889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 51903840 - 51903912
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||| ||||||||| |||||| |||||||||||||||| | || ||||||||||||    
T  51903840 aagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactc 51903912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 19154745 - 19154672
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||||||||| ||||| ||  |||||||||||  ||| |||||||||||||||||  || |||||||||||||    
T  19154745 aagaaactaaactaacccacccaaattgacatcaaagagaatcgaacctgagacctttaggaggagcacactct 19154672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 47454579 - 47454651
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||| ||||| || ||||||| ||| || || |||||||||||||||||| || ||||||||||||    
T  47454579 aagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactc 47454651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 52769945 - 52770017
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || || ||||||||||    ||| ||||||||||||||||||||| ||||||||||||    
T  52769945 aagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactc 52770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 14186740 - 14186689
Alignment:
Q  57 taaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||| |||||| |||||||||||||||||  || ||||||||||||    
T  14186740 taaattgacaccggagagaatcgaacctgagaccttgaggaggagcacactc 14186689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 2597223 - 2597261
Alignment:
Q  77 tcgaacctgagacctcaagaaggagcacactcttaaatc 115  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  2597223 tcgaacctgagacctcaaggaggagcacactcctaaatc 2597261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 30510167 - 30510233
Alignment:
Q  42 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||| || ||||| |||||||   |||| |||||||||||||||||| |||||||||| ||||    
T  30510167 ctaaattagcccacttagattgacactagagagaatcgaacctgagacctcgagaaggagcatactc 30510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 11090127 - 11090196
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcaca 105  Q
    ||||| |||||||||||||||||||||||||   || | ||||||| || ||||||| || |||||||||    
T  11090127 aagaagctaaattaacctacttaaattgacactcgaaagaatcgaaactaagacctcgaggaggagcaca 11090196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 2667976 - 2667904
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||| || || || ||||||||||   ||||||||||||||||||||||| || | ||||||||||    
T  2667976 aagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactc 2667904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 4844473 - 4844545
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||  |||||| || |||||| |||||| ||||||||||| || ||||||||||||    
T  4844473 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactc 4844545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 4870169 - 4870241
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||  |||||| || |||||| |||||| ||||||||||| || ||||||||||||    
T  4870169 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactc 4870241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 10445101 - 10445173
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || ||| |||||  || | |||| |||||||||||||||||| || ||||||||||||    
T  10445101 aagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactc 10445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 10828695 - 10828767
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||||  |||||  || |||||| ||||  ||||||||||||||||||||| ||| ||||||| ||||    
T  10828695 aagaaactaacctaaccccctcaaattggcatcatagataatcgaacctgagaccttaagtaggagcatactc 10828767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 20501777 - 20501737
Alignment:
Q  69 ggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  20501777 ggagagaatcgaacctgagaccttaaggaggagcacactct 20501737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 32639059 - 32639003
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctc 92  Q
    ||||||| ||||||  | |||||||||||||  ||||| ||||||||||||||||||    
T  32639059 aagaaacaaaattaggccacttaaattgacactggagaaaatcgaacctgagacctc 32639003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 45308864 - 45308936
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||  | |||| ||||||||  | |||||||||||||||||||||| || ||||||| ||||    
T  45308864 aagaagctaaattagtccacttgaattgacactgaagataatcgaacctgagacctcgaggaggagcatactc 45308936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 49397503 - 49397575
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| ||||||||  | || ||||||||||||  |||||||||||| ||||||||| || || |||||||||    
T  49397503 aagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagacctcgaggagaagcacactc 49397575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 13030 - 13080
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||||||||||| |||||||||||||||||  || ||||||||||||    
T  13030 aaattgacatcggagagaatcgaacctgagaccttgaggaggagcacactc 13080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 25331 - 25381
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||||||| | ||||||||||||||||||||||  |||||||||||||||    
T  25331 aaattgacaccagagataatcgaacctgagaccttgagaaggagcacactc 25381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 41617 - 41683
Alignment:
Q  58 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 124  Q
    ||||||||||| |||| ||| |||||||||||||| || ||||||| ||||| | ||||||| ||||    
T  41617 aaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaa 41683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 380358 - 380308
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctga 86  Q
    |||||| ||||||| || ||| ||||||||||| |||||||||||||||||    
T  380358 aagaaattaaattagcccactcaaattgacatcagagataatcgaacctga 380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 45728 - 45793
Alignment:
Q  43 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||| ||||| || |||||||||| | |||| |||||||| |||||||||||| |||| |||||||    
T  45728 taaactaacccacctaaattgacaccagagagaatcgaacatgagacctcaaggaggaacacactc 45793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 8624 - 8676
Alignment:
Q  56 ttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    |||||||| || || |||||||||||||| |||||||||| |||| |||||||    
T  8624 ttaaattggcaccgaagataatcgaacctcagacctcaaggaggaccacactc 8676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 14927 - 14999
Alignment:
Q  36 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 108  Q
    ||||| |||||||| || |||||||||| || |||||| |||| ||  ||||||||| || ||||||||||||    
T  14927 aagaagctaaattagcccacttaaattgtcaccggagagaatcaaatatgagacctcgaggaggagcacactc 14999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 162992 - 163044
Alignment:
Q  57 taaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 109  Q
    |||||||||| |||||| |||||||||| |||||| | | |||||||||||||    
T  162992 taaattgacaccggagagaatcgaacctcagaccttatggaggagcacactct 163044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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