View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_113 (Length: 216)

Name: NF16378_high_113
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_113
NF16378_high_113
[»] chr4 (3 HSPs)
chr4 (2-216)||(54375997-54376209)
chr4 (170-206)||(8108951-8108987)
chr4 (173-206)||(10169792-10169825)
[»] chr6 (1 HSPs)
chr6 (172-208)||(32122792-32122828)
[»] chr5 (3 HSPs)
chr5 (168-216)||(25630800-25630848)
chr5 (171-204)||(28223927-28223960)
chr5 (172-216)||(4714746-4714790)
[»] chr3 (5 HSPs)
chr3 (176-216)||(5452199-5452239)
chr3 (171-203)||(40411060-40411092)
chr3 (173-216)||(10798272-10798315)
chr3 (175-214)||(55283198-55283237)
chr3 (170-206)||(28529248-28529284)
[»] chr1 (2 HSPs)
chr1 (176-211)||(39039499-39039534)
chr1 (176-206)||(26980411-26980441)
[»] chr8 (1 HSPs)
chr8 (176-206)||(28414018-28414048)
[»] chr7 (1 HSPs)
chr7 (176-206)||(25092810-25092840)
[»] chr2 (4 HSPs)
chr2 (169-206)||(32856288-32856325)
chr2 (176-216)||(3804585-3804625)
chr2 (184-216)||(11729742-11729774)
chr2 (170-206)||(12989186-12989222)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 54375997 - 54376209
Alignment:
Q  2 atgatgatgttggattatgtgatttgtggtgatgttcatgatacatttatatgtatttatatatgtaaagttagatttaaatttggaattaataaggaga 101  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  54375997 atgacgatgttggattacttgatttgtggtgatgttcatgatacatttatatgtatttata--tgtaaagttagatttaaattcggaattaataaggaga 54376094  T
Q  102 aaatgtttatgaataaagatgttttgtgtcataaacgttttgcagacatgtcaacgtgataatgtaacatgagaaatgctaacaacactcacttttcaac 201  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  54376095 aaatgtttataaataaagatgttttgtgtcataaacgttttgtagacatgtcaacgtgataatgtaacacgagaaatgctagcaacacttacttttcaac 54376194  T
Q  202 actctttttaacatt 216  Q
     ||||||||||||||    
T  54376195 gctctttttaacatt 54376209  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 8108951 - 8108987
Alignment:
Q  170 atgagaaatgctaacaacactcacttttcaacactct 206  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8108951 atgagaaatgctagcaacactcacttttcaacactct 8108987  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 10169825 - 10169792
Alignment:
Q  173 agaaatgctaacaacactcacttttcaacactct 206  Q
    |||||||||||||||| |||||||||||||||||    
T  10169825 agaaatgctaacaacattcacttttcaacactct 10169792  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 32122792 - 32122828
Alignment:
Q  172 gagaaatgctaacaacactcacttttcaacactcttt 208  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32122792 gagaaatgctaacaacactctcttttcaacactcttt 32122828  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 25630800 - 25630848
Alignment:
Q  168 acatgagaaatgctaacaacactcacttttcaacactctttttaacatt 216  Q
    ||||||||||||||| ||| ||| ||||||||||||||| |||||||||    
T  25630800 acatgagaaatgctagcaatacttacttttcaacactctctttaacatt 25630848  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 28223960 - 28223927
Alignment:
Q  171 tgagaaatgctaacaacactcacttttcaacact 204  Q
    |||||||||||| |||||||||||||||||||||    
T  28223960 tgagaaatgctagcaacactcacttttcaacact 28223927  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 4714746 - 4714790
Alignment:
Q  172 gagaaatgctaacaacactcacttttcaacactctttttaacatt 216  Q
    ||||||||||||||||  |||||||| ||| ||||||||||||||    
T  4714746 gagaaatgctaacaactttcacttttgaaccctctttttaacatt 4714790  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 5452239 - 5452199
Alignment:
Q  176 aatgctaacaacactcacttttcaacactctttttaacatt 216  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  5452239 aatgctagcaacactcacttttcaacactctctttaacatt 5452199  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 40411060 - 40411092
Alignment:
Q  171 tgagaaatgctaacaacactcacttttcaacac 203  Q
    |||||||||||||||||||||||||||||||||    
T  40411060 tgagaaatgctaacaacactcacttttcaacac 40411092  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 10798272 - 10798315
Alignment:
Q  173 agaaatgctaacaacactcacttttcaacactctttttaacatt 216  Q
    ||||||| || |||||||||||||||||||||||||| ||||||    
T  10798272 agaaatgttagcaacactcacttttcaacactcttttcaacatt 10798315  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 55283237 - 55283198
Alignment:
Q  175 aaatgctaacaacactcacttttcaacactctttttaaca 214  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  55283237 aaatgctaacaacactcacttttaaacactctctttaaca 55283198  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 28529248 - 28529284
Alignment:
Q  170 atgagaaatgctaacaacactcacttttcaacactct 206  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  28529248 atgaggaatgctagcaacactcacttttcaacactct 28529284  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 39039534 - 39039499
Alignment:
Q  176 aatgctaacaacactcacttttcaacactcttttta 211  Q
    ||||||| ||||||||||||||||||||||||||||    
T  39039534 aatgctagcaacactcacttttcaacactcttttta 39039499  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 26980441 - 26980411
Alignment:
Q  176 aatgctaacaacactcacttttcaacactct 206  Q
    |||||||||||||||||||||||||||||||    
T  26980441 aatgctaacaacactcacttttcaacactct 26980411  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 28414048 - 28414018
Alignment:
Q  176 aatgctaacaacactcacttttcaacactct 206  Q
    |||||||||||||||||||||||||||||||    
T  28414048 aatgctaacaacactcacttttcaacactct 28414018  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 25092840 - 25092810
Alignment:
Q  176 aatgctaacaacactcacttttcaacactct 206  Q
    |||||||||||||||||||||||||||||||    
T  25092840 aatgctaacaacactcacttttcaacactct 25092810  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 32856325 - 32856288
Alignment:
Q  169 catgagaaatgctaacaacactcacttttcaacactct 206  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  32856325 catgaggaatgctaacaacactcacttttgaacactct 32856288  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 3804585 - 3804625
Alignment:
Q  176 aatgctaacaacactcacttttcaacactctttttaacatt 216  Q
    ||||||| | ||||||||||||||||||||| |||||||||    
T  3804585 aatgctagctacactcacttttcaacactctctttaacatt 3804625  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 11729774 - 11729742
Alignment:
Q  184 caacactcacttttcaacactctttttaacatt 216  Q
    ||||||||||||||||||||||||| |||||||    
T  11729774 caacactcacttttcaacactctttctaacatt 11729742  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 12989186 - 12989222
Alignment:
Q  170 atgagaaatgctaacaacactcacttttcaacactct 206  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  12989186 atgaggaatgctagcaacactcacttttcaacactct 12989222  T

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