View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_115 (Length: 209)
Name: NF16378_high_115
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_115 |
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| [»] scaffold0021 (1 HSPs) |
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| [»] scaffold0596 (1 HSPs) |
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| [»] scaffold0323 (1 HSPs) |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 11543358 - 11543214
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11543358 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaat-ttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
11543260 |
T |
|
| Q |
150 |
tgtgtcgtctgctccccccaaaagaactctcttcctttgatctgtg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11543259 |
tgtgtcgtctgctccccccaaaagaactctcttcctttgatctgtg |
11543214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 21432511 - 21432610
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaa-ttcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgta |
148 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21432511 |
agaaataacctaaaagaaagaaaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgta |
21432610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 119371 - 119213
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
119371 |
agaaataacctaaaagaaaggaaaattcttgctccaagactcgaatcttcaatttctatctccaaagctcttctctttgttgcatgtagtgtctgtgtag |
119272 |
T |
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| Q |
150 |
tgtgtc----gtctgctcccccc---aaaagaactctcttcctttgatctgtgctgctc |
201 |
Q |
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|||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| |
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| T |
119271 |
tgtgtcgtgagtctgctccccccaaaaaaagaactttcttcctttgatctgtgatgctc |
119213 |
T |
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Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 10889863 - 10889705
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10889863 |
agaaataacctaaaagaaaggaaaattcttgctccaagactcgaatcttcaatttctatctccaaagctcttctctttgttgcatgtagtgtctgtgtag |
10889764 |
T |
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| Q |
150 |
tgtgtc----gtctgctcccccc---aaaagaactctcttcctttgatctgtgctgctc |
201 |
Q |
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|||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| |
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| T |
10889763 |
tgtgtcgtgagtctgctccccccaaaaaaagaactttcttcctttgatctgtgatgctc |
10889705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 22406561 - 22406675
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22406561 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
22406660 |
T |
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| Q |
150 |
tgtgtcgtctgctcc |
164 |
Q |
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|||||||||| |||| |
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| T |
22406661 |
tgtgtcgtctcctcc |
22406675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 23165142 - 23165216
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctct |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
23165142 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctat-cccaaaactcttctct |
23165216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 23576399 - 23576473
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctct |
125 |
Q |
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| T |
23576399 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctat-cccaaaactcttctct |
23576473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 4442 - 4546
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
4541 |
T |
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| Q |
150 |
tgtgt |
154 |
Q |
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||||| |
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| T |
4542 |
tgtgt |
4546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 10363 - 10256
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
149 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10363 |
agaaataacctaaaagaaaggaaaattcttactccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
10264 |
T |
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| Q |
150 |
tgtgtcgt |
157 |
Q |
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|||||||| |
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| T |
10263 |
tgtgtcgt |
10256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 8316 - 8420
Alignment:
| Q |
50 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgtagtgtctgtgtag |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8316 |
agaaataacctaaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctgttctctttgttgcatgtagtgtctgtgtaa |
8415 |
T |
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| Q |
150 |
tgtgt |
154 |
Q |
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||||| |
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| T |
8416 |
tgtgt |
8420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 14277283 - 14277393
Alignment:
| Q |
50 |
agaaataacctaaaagaaagga-aaattcttgctccaagacttgaatcttcaatttctatcc-----ccaaagctcttctctttgttgcatgtagtgtct |
143 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
14277283 |
agaaataacctaaaagaaaggggaaatttttgctccaagacttgaatcttcaattcctatccccaaaccaaagctcttctctttgttgcatgtagtgtct |
14277382 |
T |
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| Q |
144 |
gtgtagtgtgt |
154 |
Q |
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|||| ||||| |
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| T |
14277383 |
ctgtaatgtgt |
14277393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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