View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_116 (Length: 209)
Name: NF16378_high_116
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_116 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 45754233 - 45754409
Alignment:
| Q |
11 |
tcgaagaatattaactaaatgttatatgnnnnnnncaatttgaaatcaattaatctcttatttaaatcttatttgcagtatattctcacaaatataggct |
110 |
Q |
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| T |
45754233 |
tcgaataatattaactaaatgttatatgtttttttcaatttgaaatcaattaatctcttatttaaatcttatttgcagtatattctcacaaatataggct |
45754332 |
T |
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| Q |
111 |
aaataattttttctggcagaaaatatagtctagatataacatcctctaaaattataaagtggaactcactaaaccta |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
45754333 |
aaataattttttctggcagaaaatatagtctagatataacatcctcgaaaattataaagtcgaactcactaaaccta |
45754409 |
T |
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