View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_14 (Length: 547)
Name: NF16378_high_14
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 12 - 528
Target Start/End: Complemental strand, 4970855 - 4970343
Alignment:
| Q |
12 |
atgaagcaaatataaactctaaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgcaaaaatccttggatg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4970855 |
atgaagcaaatataaactctaaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgctaaaatccttggatg |
4970756 |
T |
|
| Q |
112 |
aagctgaagaaagttactaactaggnnnnnnnnncttatattattacaatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttt |
211 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970755 |
aagctgaagaaagttactaactaggaaaaaaaa-cttatatta---caatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttt |
4970660 |
T |
|
| Q |
212 |
tacaatgttatctctttgttacaatatatttaacaaagacataacaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970659 |
tacaatgttatctctttgttacaatatatttaacaaagacatagcaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgt |
4970560 |
T |
|
| Q |
312 |
acctgaaaattatcacaaaaacataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggnnnnnnnnn |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970559 |
acctgaaaattatcacaaaaacataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggaaaaaagaa |
4970460 |
T |
|
| Q |
412 |
nnntgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtgg |
511 |
Q |
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| T |
4970459 |
aaatgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtgg |
4970360 |
T |
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| Q |
512 |
tgtaatggggtggatgc |
528 |
Q |
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||||||||||||||||| |
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| T |
4970359 |
tgtaatggggtggatgc |
4970343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 12 - 528
Target Start/End: Complemental strand, 4988764 - 4988252
Alignment:
| Q |
12 |
atgaagcaaatataaactctaaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgcaaaaatccttggatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4988764 |
atgaagcaaatataaactctaaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgctaaaatccttggatg |
4988665 |
T |
|
| Q |
112 |
aagctgaagaaagttactaactaggnnnnnnnnncttatattattacaatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttt |
211 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4988664 |
aagctgaagaaagttactaactaggaaaaaaaa-cttatatta---caatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttt |
4988569 |
T |
|
| Q |
212 |
tacaatgttatctctttgttacaatatatttaacaaagacataacaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgt |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4988568 |
tacaatgttatctctttgttacaatatatttaacaaagacatagcaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgt |
4988469 |
T |
|
| Q |
312 |
acctgaaaattatcacaaaaacataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggnnnnnnnnn |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4988468 |
acctgaaaattatcacaaaaacataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggaaaaaagaa |
4988369 |
T |
|
| Q |
412 |
nnntgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtgg |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4988368 |
aaatgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtgg |
4988269 |
T |
|
| Q |
512 |
tgtaatggggtggatgc |
528 |
Q |
| |
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||||||||||||||||| |
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| T |
4988268 |
tgtaatggggtggatgc |
4988252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 416 - 488
Target Start/End: Complemental strand, 28571327 - 28571255
Alignment:
| Q |
416 |
gcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataagga |
488 |
Q |
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||||||||||||||||| ||||||||| |||| |||||| ||||||||||||| |||||||||||| |||||| |
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| T |
28571327 |
gcattgatataggaatttattaattacggcgtagaaagggaaaaagggtgcaaaaatgaagaatgtgtaagga |
28571255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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