View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_15 (Length: 545)
Name: NF16378_high_15
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 170 - 537
Target Start/End: Complemental strand, 7461333 - 7460962
Alignment:
| Q |
170 |
gtatctagttgcaataataaattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnn |
265 |
Q |
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| T |
7461333 |
gtatctagttgcaataataaattaaataagaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgatttttt |
7461234 |
T |
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| Q |
266 |
nnaagacttaagtacccttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
365 |
Q |
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| T |
7461233 |
ttaagactgaagtactcttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
7461134 |
T |
|
| Q |
366 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
465 |
Q |
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| T |
7461133 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
7461034 |
T |
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| Q |
466 |
catgtcgttggcactgttttctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctc |
537 |
Q |
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| T |
7461033 |
catgtcgttagcactgttttctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctc |
7460962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 189 - 537
Target Start/End: Complemental strand, 7446370 - 7446018
Alignment:
| Q |
189 |
aattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnnnnaagacttaagtaccctt |
284 |
Q |
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| T |
7446370 |
aattaaataagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactctt |
7446271 |
T |
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| Q |
285 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
384 |
Q |
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| T |
7446270 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
7446171 |
T |
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| Q |
385 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttt |
484 |
Q |
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| T |
7446170 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttt |
7446071 |
T |
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| Q |
485 |
tctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctc |
537 |
Q |
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| T |
7446070 |
tctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctc |
7446018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 7461467 - 7461391
Alignment:
| Q |
36 |
tatagtaatataatattgttggagaaatgatgattggaaattaaaattttcatgtcaaattataattcaatccactg |
112 |
Q |
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| T |
7461467 |
tatagtaatataatattgttggagaaatgatgattggaaattaaaattttgatgtcaaattataattcaatccactg |
7461391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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