View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_16 (Length: 545)

Name: NF16378_high_16
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_16
NF16378_high_16
[»] chr1 (34 HSPs)
chr1 (16-531)||(8281110-8281626)
chr1 (56-440)||(35109418-35109797)
chr1 (40-481)||(10996771-10997216)
chr1 (91-454)||(32736864-32737229)
chr1 (287-465)||(918336-918514)
chr1 (128-469)||(29651716-29652058)
chr1 (175-469)||(47703787-47704081)
chr1 (301-487)||(22819506-22819693)
chr1 (78-487)||(47098660-47099070)
chr1 (375-469)||(40816668-40816762)
chr1 (135-487)||(47102674-47103026)
chr1 (91-487)||(16124349-16124751)
chr1 (304-416)||(17345424-17345536)
chr1 (135-469)||(13598310-13598645)
chr1 (383-487)||(11031309-11031412)
chr1 (91-469)||(19072789-19073173)
chr1 (91-469)||(19120679-19121063)
chr1 (91-326)||(27104367-27104602)
chr1 (139-195)||(48382607-48382663)
chr1 (431-470)||(6354261-6354300)
chr1 (422-465)||(48382346-48382389)
chr1 (373-469)||(9022758-9022852)
chr1 (400-498)||(25116523-25116623)
chr1 (342-490)||(32889558-32889703)
chr1 (387-466)||(15864726-15864805)
chr1 (78-136)||(17345707-17345766)
chr1 (400-487)||(27104236-27104322)
chr1 (39-118)||(48591013-48591092)
chr1 (39-118)||(48600708-48600787)
chr1 (78-136)||(50521291-50521350)
chr1 (135-256)||(775584-775706)
chr1 (390-462)||(2210624-2210697)
chr1 (96-196)||(9023956-9024059)
chr1 (173-256)||(9476211-9476295)
[»] chr2 (28 HSPs)
chr2 (130-519)||(28770576-28770964)
chr2 (128-519)||(3277908-3278294)
chr2 (128-469)||(2869544-2869886)
chr2 (275-505)||(18674216-18674447)
chr2 (38-326)||(16388465-16388760)
chr2 (214-469)||(14698861-14699112)
chr2 (335-429)||(15903782-15903876)
chr2 (39-136)||(16388259-16388355)
chr2 (78-487)||(33528459-33528868)
chr2 (128-487)||(13569234-13569591)
chr2 (135-469)||(33118048-33118380)
chr2 (128-469)||(8390001-8390341)
chr2 (78-469)||(31055892-31056288)
chr2 (135-487)||(34388771-34389113)
chr2 (225-469)||(2837881-2838124)
chr2 (128-469)||(39482836-39483178)
chr2 (390-487)||(21630111-21630207)
chr2 (338-487)||(41586385-41586532)
chr2 (390-487)||(17865371-17865467)
chr2 (91-469)||(8039923-8040309)
chr2 (78-256)||(20522070-20522254)
chr2 (225-414)||(1345448-1345635)
chr2 (452-487)||(11049487-11049522)
chr2 (275-426)||(27139853-27140004)
chr2 (353-408)||(35397639-35397694)
chr2 (391-469)||(10707104-10707182)
chr2 (370-408)||(27149207-27149245)
chr2 (391-487)||(23078306-23078400)
[»] chr4 (31 HSPs)
chr4 (173-498)||(34670488-34670810)
chr4 (39-487)||(37781673-37782126)
chr4 (39-531)||(873307-873809)
chr4 (132-466)||(42599429-42599762)
chr4 (91-487)||(10047242-10047643)
chr4 (353-487)||(5112366-5112499)
chr4 (285-472)||(39593789-39593974)
chr4 (56-195)||(4956015-4956157)
chr4 (78-435)||(1983187-1983546)
chr4 (212-380)||(8114679-8114843)
chr4 (214-487)||(16623128-16623398)
chr4 (273-408)||(18912276-18912411)
chr4 (301-487)||(39774140-39774325)
chr4 (90-487)||(3777412-3777811)
chr4 (391-469)||(24333978-24334056)
chr4 (390-487)||(5269035-5269131)
chr4 (375-487)||(25861868-25861980)
chr4 (78-256)||(25862085-25862269)
chr4 (128-256)||(39245899-39246028)
chr4 (128-295)||(24333717-24333880)
chr4 (135-241)||(38152517-38152623)
chr4 (391-469)||(3793932-3794010)
chr4 (135-256)||(54867096-54867218)
chr4 (390-487)||(6743250-6743345)
chr4 (428-465)||(42684974-42685011)
chr4 (352-439)||(36175236-36175321)
chr4 (136-262)||(5147590-5147717)
chr4 (135-326)||(16630675-16630865)
chr4 (95-160)||(42234512-42234574)
chr4 (277-326)||(4956232-4956281)
chr4 (353-469)||(18377489-18377604)
[»] scaffold0076 (1 HSPs)
scaffold0076 (39-326)||(15983-16265)
[»] chr6 (19 HSPs)
chr6 (66-481)||(98998-99412)
chr6 (78-481)||(33721399-33721804)
chr6 (65-492)||(1114931-1115361)
chr6 (78-469)||(31979363-31979757)
chr6 (173-487)||(24435806-24436117)
chr6 (78-462)||(10077027-10077412)
chr6 (335-469)||(14521784-14521919)
chr6 (342-469)||(31936695-31936820)
chr6 (375-487)||(5572078-5572188)
chr6 (277-452)||(30517998-30518172)
chr6 (128-254)||(22963605-22963732)
chr6 (128-254)||(23824661-23824788)
chr6 (135-241)||(5017547-5017653)
chr6 (390-469)||(21801196-21801275)
chr6 (78-135)||(31077146-31077203)
chr6 (91-469)||(18232708-18233091)
chr6 (135-199)||(4629865-4629929)
chr6 (65-136)||(27165539-27165611)
chr6 (128-196)||(30519145-30519213)
[»] scaffold0016 (1 HSPs)
scaffold0016 (215-481)||(102334-102598)
[»] chr8 (26 HSPs)
chr8 (178-505)||(31513148-31513466)
chr8 (301-469)||(7493025-7493193)
chr8 (342-469)||(19752246-19752372)
chr8 (301-487)||(3051197-3051382)
chr8 (214-410)||(9054748-9054942)
chr8 (78-469)||(5702332-5702730)
chr8 (422-465)||(33503697-33503740)
chr8 (135-487)||(4696443-4696781)
chr8 (212-425)||(8863521-8863732)
chr8 (172-469)||(23799428-23799725)
chr8 (301-426)||(5990456-5990581)
chr8 (373-469)||(28307711-28307807)
chr8 (129-195)||(11771855-11771921)
chr8 (391-469)||(26403081-26403159)
chr8 (91-136)||(5990748-5990793)
chr8 (79-136)||(9055025-9055082)
chr8 (65-129)||(7493264-7493328)
chr8 (294-466)||(14601233-14601405)
chr8 (42-129)||(8863833-8863920)
chr8 (114-165)||(32916304-32916355)
chr8 (135-295)||(26403256-26403415)
chr8 (136-195)||(28387895-28387955)
chr8 (121-203)||(34477335-34477417)
chr8 (225-469)||(6127224-6127468)
chr8 (88-136)||(28307421-28307469)
chr8 (301-415)||(34477128-34477239)
[»] chr5 (21 HSPs)
chr5 (95-480)||(5611009-5611398)
chr5 (275-472)||(30899918-30900114)
chr5 (341-487)||(28832374-28832519)
chr5 (338-426)||(2630345-2630433)
chr5 (301-487)||(11181667-11181852)
chr5 (78-465)||(42127266-42127656)
chr5 (73-465)||(34842449-34842843)
chr5 (91-469)||(17003811-17004193)
chr5 (342-469)||(31300447-31300574)
chr5 (91-230)||(3880166-3880307)
chr5 (375-487)||(19588896-19589007)
chr5 (353-487)||(24553362-24553495)
chr5 (91-136)||(2630087-2630132)
chr5 (375-469)||(10281901-10281997)
chr5 (336-411)||(6741964-6742039)
chr5 (98-136)||(28537489-28537527)
chr5 (39-136)||(30899668-30899765)
chr5 (313-407)||(33030854-33030948)
chr5 (391-487)||(11916807-11916901)
chr5 (135-256)||(24553569-24553691)
chr5 (135-199)||(12084298-12084361)
[»] chr3 (32 HSPs)
chr3 (95-480)||(21156296-21156685)
chr3 (135-469)||(18552726-18553058)
chr3 (78-487)||(40592606-40593020)
chr3 (91-531)||(29100033-29100472)
chr3 (268-458)||(44658345-44658536)
chr3 (313-469)||(3328198-3328355)
chr3 (354-490)||(8126761-8126895)
chr3 (39-395)||(25516791-25517153)
chr3 (173-469)||(1736145-1736442)
chr3 (313-487)||(3323515-3323689)
chr3 (287-519)||(5366113-5366348)
chr3 (135-469)||(48438126-48438461)
chr3 (375-468)||(25795931-25796024)
chr3 (78-487)||(8370313-8370724)
chr3 (301-419)||(21353639-21353757)
chr3 (78-469)||(30709630-30710028)
chr3 (390-487)||(47923728-47923824)
chr3 (375-487)||(24694990-24695101)
chr3 (78-154)||(47924028-47924106)
chr3 (341-487)||(1417315-1417460)
chr3 (391-469)||(3715843-3715921)
chr3 (173-387)||(4386851-4387065)
chr3 (135-487)||(26298900-26299250)
chr3 (128-196)||(34482106-34482174)
chr3 (375-435)||(40844801-40844861)
chr3 (431-462)||(10274589-10274620)
chr3 (391-469)||(47649737-47649815)
chr3 (375-469)||(25929237-25929332)
chr3 (135-196)||(25929556-25929617)
chr3 (135-199)||(8126613-8126677)
chr3 (173-256)||(21711173-21711257)
chr3 (135-199)||(27026857-27026920)
[»] scaffold0002 (1 HSPs)
scaffold0002 (91-505)||(14548-14964)
[»] chr7 (24 HSPs)
chr7 (135-487)||(20284001-20284351)
chr7 (313-469)||(5817122-5817278)
chr7 (135-469)||(29159715-29160050)
chr7 (173-362)||(28617184-28617372)
chr7 (135-469)||(55860-56194)
chr7 (128-467)||(2647551-2647888)
chr7 (304-459)||(3047335-3047489)
chr7 (313-487)||(23402848-23403022)
chr7 (342-487)||(9185009-9185153)
chr7 (342-487)||(9189842-9189986)
chr7 (342-469)||(2580508-2580635)
chr7 (313-487)||(9235417-9235591)
chr7 (78-486)||(49091512-49091924)
chr7 (135-469)||(4796520-4796852)
chr7 (339-465)||(45685601-45685727)
chr7 (135-469)||(33332302-33332635)
chr7 (269-467)||(761219-761416)
chr7 (91-256)||(9190071-9190241)
chr7 (389-487)||(46516140-46516237)
chr7 (128-256)||(46516373-46516502)
chr7 (39-196)||(27984294-27984460)
chr7 (129-203)||(23575488-23575564)
chr7 (373-426)||(27984633-27984686)
chr7 (91-199)||(9185284-9185396)
[»] scaffold0006 (2 HSPs)
scaffold0006 (135-469)||(5595-5930)
scaffold0006 (135-487)||(2404-2756)
[»] scaffold0036 (1 HSPs)
scaffold0036 (78-199)||(85535-85659)
[»] scaffold0148 (1 HSPs)
scaffold0148 (128-271)||(10634-10778)
[»] scaffold0078 (1 HSPs)
scaffold0078 (335-469)||(23643-23777)


Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Original strand, 8281110 - 8281626
Alignment:
Q  16 atatatacgattatattgaattatgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8281110 atatatacgattatattgaattatgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataa 8281209  T
Q  116 agtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8281210 agtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacagagataagcaagaagggaaggagacaa 8281309  T
Q  216 cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgtt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  8281310 cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaataactctctgatccactatgataagaatgatacaaatatgtt 8281409  T
Q  316 acaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaa 415  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281410 acaagaaattaacataatcgctcacaaagaacaaattctaatttctatcaattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaa 8281509  T
Q  416 ggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccc 515  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281510 ggaagtttttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccc 8281609  T
Q  516 taaa-ttccctcctttg 531  Q
    |||| ||| ||||||||    
T  8281610 taaagttctctcctttg 8281626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 56 - 440
Target Start/End: Complemental strand, 35109797 - 35109418
Alignment:
Q  56 aataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagta 155  Q
    |||||| | ||||||| ||||||||||||||||  |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||     
T  35109797 aataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatgca--aagtagtctcaagcaacaacaaacagacctagatctaagtg 35109700  T
Q  156 tgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacct 255  Q
     | | ||||| || | ||||||| |||| |||||||| ||| |||||| ||| || |||||||||| | ||||||||| ||||| | | |||||||||||    
T  35109699 cggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagagaaagaaacaacacaccgatattgtttactcagtttggtccaaaatgacct 35109600  T
Q  256 actttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattcta 355  Q
    | | | ||||  |||||  ||||||| ||| |||||||||||||  |||||||||| |||||||||||||| | ||   ||||||||||||||||   ||    
T  35109599 aatct-gagg--agagacaagctctctgatccactatgataagatagatacaaataggttacaagaaattagcttaaaagctcacaaagaacaaacctta 35109503  T
Q  356 atttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 440  Q
    ||||||| ||| | || ||||||| | |||||||||||||||| | ||||||| ||||||||||| |||||||| ||||||||||    
T  35109502 atttctacccaattttcaagtcacacacactcacaatgaatcctacgagaaaatactaaaggaagcttttttatccttcctctaa 35109418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 40 - 481
Target Start/End: Original strand, 10996771 - 10997216
Alignment:
Q  40 gttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaaca 139  Q
    ||||||||||| ||| || ||| | ||||||| |||||| || |||||| ||||| ||||||||||||||||||||||||| ||||||  |||||||| |    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagtagcctcaaggtacaacaaata 10996870  T
Q  140 gacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaaggg-------aaggagacaacacaccaacattgttta 232  Q
    | |||| |  ||||| |||||||||| || |  || | ||| |||||| |||||||  || ||  |       ||  | |||||||||||| ||||||||    
T  10996871 gtcctaaaattaagtgtgaagcaacaccacatgcagattcatagcaacgaagataaaaaaaaaaagtggagaaaattaaacaacacaccaatattgttta 10996970  T
Q  233 cccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatat 332  Q
    ||||||||| |  | ||||||||||| | |  |||||  |    ||||  ||| |||||  |||||| |||||||||||||||||||||||||||| ||     
T  10996971 cccagttcggtttagaatgacctactcttggtgaaagcaa----ctctttgatccacta--ataagagtgatacaaatatgttacaagaaattaacttaa 10997064  T
Q  333 tcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaa-cactaaaggaagatttttt--at 429  Q
      | | ||||| ||||||  |||||||||| ||||| || ||||||||| |||||||  ||||||| || |||||| |||||||||||| ||||||  ||    
T  10997065 aagataacaaataacaaaccctaatttctacccatttttcaagtcaccctcactcacgttgaatcctaaaagaaaaacactaaaggaagcttttttttat 10997164  T
Q  430 tcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 481  Q
      |||||||||||| || |||||| |||||||||||| ||||| ||||||||    
T  10997165 cattcctctaatgacatttcactatccaaggtgtttaaaaatgtttcccaac 10997216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 91 - 454
Target Start/End: Complemental strand, 32737229 - 32736864
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaa 186  Q
    ||||||||| || ||||||||  ||||||| |||||||||||||||    |||||| ||||||||||| |||||||||| || | | ||||||||||| |    
T  32737229 aaaggaagtggtgatcaatgagcaaagtagcctcaagcaacaacaacgaaacagacttagatctaagtgtgaagcaacaccacaaatataatcaaagcta 32737130  T
Q  187 caaagataagcaagaag-ggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgat 285  Q
    ||| || ||| |||||| | ||| | || | |||| || ||||| ||| ||| ||||| |||||||||||||| ||  ||| |||||  | ||||| |||    
T  32737129 caatgaaaagaaagaagagaaagaaaactagacacaaatattgtgtactcagatcgatccaaaatgacctactctg--ggagagagagaaactctctgat 32737032  T
Q  286 tcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcac 385  Q
      |||||||| |   ||||||||| | ||||||| |||||| | ||   | ||| ||||||||||  |||||||||| ||||| || |||||| |  |||    
T  32737031 caactatgatgaaggtgatacaaagaggttacaaaaaattagcttaaaagttcataaagaacaaaccctaatttctacccatttttcaagtcatcgacac 32736932  T
Q  386 tcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactac 454  Q
    ||||||||||||| |||||||||| ||||||||||   ||| ||  |||||||||||||||||||||||    
T  32736931 tcacaatgaatcctaagagaaaaccctaaaggaag-gatttgatcattcctctaatgagatctcactac 32736864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 287 - 465
Target Start/End: Complemental strand, 918514 - 918336
Alignment:
Q  287 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtc-acccgcac 385  Q
    ||||||||||||| ||||||||| || ||||||||||||| | ||    |||||||||||||||   ||||||||| ||||| || || || || |  ||    
T  918514 cactatgataagagtgatacaaagatattacaagaaattatcttacaaactcacaaagaacaaaccataatttctacccatttttcaattccactcaaac 918415  T
Q  386 tcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
     |||||||||||| ||||||||||| ||| ||||| ||||  || ||||||||||||||||||||||||||||| |||||    
T  918414 ccacaatgaatcctaagagaaaacaataatggaagcttttg-atgcttcctctaatgagatctcactacccaagatgttt 918336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 469
Target Start/End: Original strand, 29651716 - 29652058
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| |||||||| ||||||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| ||    
T  29651716 caacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagat 29651815  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    | || |||||||||| | ||| |||||||| | ||| ||  |||||  ||| |||| || ||||||||| | | || ||||||    |||||||||||||    
T  29651816 ttttgacccagttcggtccaatatgacctaatctggggg--agagagcagcactccaatccactatgatgaaagtgttacaaaagaattacaagaaatta 29651913  T
Q  327 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagat 422  Q
    || |||  ||| ||| ||||||||   |||||||||| ||||  |||  ||||||| |||||   | ||||||||| |||||||||||| |||||||  |    
T  29651914 acttataagcttacacaagaacaagacctaatttctacccat--tttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaaact 29652011  T
Q  423 tttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||| || |||||  |  ||| |||||||||||||||||||||||||    
T  29652012 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 175 - 469
Target Start/End: Complemental strand, 47704081 - 47703787
Alignment:
Q  175 taatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaa 273  Q
    |||||||||||| |||||||||||| ||| | ||||| | |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |    
T  47704081 taatcaaagcaataaagataagcaatgaaagaaaggaaaaaacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca 47703982  T
Q  274 tagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattattt 372  Q
      ||||||| || ||||||||| | | || ||||||    ||||||||||||| | ||   ||| ||| ||||||||   |||||||||| ||||| | |    
T  47703981 --gctctccaatccactatgatgaaagtgttacaaaagaattacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccattttgt 47703884  T
Q  373 aagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
      ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||||||  ||||  |  ||| |||||||||||||||||||||||||    
T  47703883 --gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagtttttttatcattccaatggtgaaatctcactacccaaggtgtttacaa 47703787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 487
Target Start/End: Original strand, 22819506 - 22819693
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 400  Q
    ||||||||||  |||||||||||||| | | || |||||||||||| ||    ||||||||| ||||| || ||||||||| ||||| |||||||||| |    
T  22819506 tgatacaaatgagttacaagaaattagctttttagctcacaaagaataagacataatttctaaccatttttcaagtcacccacactctcaatgaatccta 22819605  T
Q  401 agag--aaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||  ||||||| |||||||| ||||| || |||||  |  ||| || | |||||||||||||||||| |||| |||||||| |||||    
T  22819606 agagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatgtaactacccaaggtgtttac-aatgtttcccaacccaaga 22819693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 78 - 487
Target Start/End: Complemental strand, 47099070 - 47098660
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 172  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||| ||||||||    ||||||||| |||||||| |  ||||||| || |      
T  47099070 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagtaacaacaacaaaacagacctaaatctaagtgtagagcaacaccacaag 47098972  T
Q  173 cataatcaaagcaacaaagataagcaag-aagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 271  Q
     ||||||||||||| ||||||||||||  || | |||||   |||||||||| |||||| |||||||||| | ||| |||||| | | ||| ||| ||||    
T  47098971 tataatcaaagcaataaagataagcaatcaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccgaatctgggggagagag 47098872  T
Q  272 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattat 370  Q
     |  || |||| || ||||| ||| | | || |||||  | |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| |    
T  47098871 ca--gccctccaatccactaagatgaaagtgttacaatga-gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatt-t 47098776  T
Q  371 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaa 470  Q
    | |  |||||| ||||| ||||||| || |||| ||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| ||    
T  47098775 tcacatcacccacactctcaatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aa 47098677  T
Q  471 tggttcccaacacaaga 487  Q
    || |||||||| |||||    
T  47098676 tgtttcccaacccaaga 47098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 469
Target Start/End: Complemental strand, 40816762 - 40816668
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  40816762 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 487
Target Start/End: Complemental strand, 47103026 - 47102674
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaag-aagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |   ||||||||||||| ||||||||||||  || | |||||   |||||||||| |||||| ||    
T  47103026 aaacagacctaaatctaagtgtagagcaacaccacaagtataatcaaagcaataaagataagcaatcaaagaaaggaacaaacacaccaaaattgttgac 47102927  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| |||||||| | | | ||| |||| |  ||  ||| || ||||| ||| | |||| |||||  | |||||||||||||||| |||     
T  47102926 ccagttcggtccaatatgacctaatctaggggagagagca--gccatccaatccactaagatgaaaatgttacaatga-gttacaagaaattaacttata 47102830  T
Q  334 cgctcacaaa-gaacaaattctaatttctat--ccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttatt 430  Q
     ||  ||||| |||||| | |||||||||||  ||||| || |  |||| | ||||| |||||||||| |||| ||||||| |||| ||| ||||| ||     
T  47102829 agcatacaaaagaacaagtcctaatttctatacccatttttcatatcactcacactctcaatgaatcctaagaaaaaacacaaaagaaagctttttgatc 47102730  T
Q  431 cttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    |||||  | |||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  47102729 cttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47102674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 487
Target Start/End: Complemental strand, 16124751 - 16124349
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagta-gtctcaagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 184  Q
    ||||||||| |||||||||||||||| |  ||| |||||||||||||     |||||||||||||||| | |  ||||||| || | |||||||||||||    
T  16124751 aaaggaagtggtaatcaatgaataaaatgtgtc-caagcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaaacataatcaaagc 16124653  T
Q  185 aacaaagataagcaag--aagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctcc 282  Q
    || |||||||||| |   |||  |||||   |||||||||| |||||| || ||||||| | ||| |||||||| | ||| ||| |||| |  || ||||    
T  16124652 aataaagataagctatgaaagaaaaggaacaaacacaccaagattgttgactcagttcggtccaatatgacctaatctgggggagagagca--gccctcc 16124555  T
Q  283 gattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcaccc 381  Q
     || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| ||||||||   |||||||||| ||||| | |  || ||||    
T  16124554 aatccactatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacataagaacaagacctaatttctacccattttgt--gttaccc 16124457  T
Q  382 gcactcacaat---gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttccc 478  Q
     ||||  ||||   |||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||    
T  16124456 acactttcaataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttccc 16124358  T
Q  479 aacacaaga 487  Q
    ||| |||||    
T  16124357 aacccaaga 16124349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 416
Target Start/End: Complemental strand, 17345536 - 17345424
Alignment:
Q  304 tacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaaga 403  Q
    ||||||| || |||||||||||| ||||   || |||||||||||||  |||||||||| ||||| |||||||||||| |||||  ||||||||  ||||    
T  17345536 tacaaatgtgctacaagaaattagcataagagcccacaaagaacaaaacctaatttctacccattttttaagtcacccacactcttaatgaatcttaaga 17345437  T
Q  404 gaaaacactaaag 416  Q
    |||||||| ||||    
T  17345436 gaaaacacaaaag 17345424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 469
Target Start/End: Original strand, 13598310 - 13598645
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  13598310 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 13598409  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| |||||||| | ||| ||  |||||  ||| || | || ||||||||| | | || ||||||   | |||||||||||| | |||     
T  13598410 ccagttcggtccaatatgacctaatctggggg--agagagcagcccttcaatccactatgatgaaagtgttacaaaagagatacaagaaattagcttata 13598507  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca---atgaatccaaagagaaaacactaaaggaagattttttat 429  Q
     ||| ||| ||||||||    |||||||||  |||  |||  ||||||| ||||| ||   |||||||| |||||||||||| |||||||| ||||| ||    
T  13598508 agcttacacaagaacaagacttaatttctactcat--tttgtgtcacccacactctcaatgatgaatcctaagagaaaacacaaaaggaagctttttgat 13598605  T
Q  430 tcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
     |||||  |  ||| |||||||||||||||||||||||||    
T  13598606 ccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 487
Target Start/End: Complemental strand, 11031412 - 11031309
Alignment:
Q  383 cactcacaatgaatccaaagagaaaa-cactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 481  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||||| || |||||  ||||||   ||||||||||| |||||||||||||| ||||||||    
T  11031412 cactcacaatgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaa--ctcactacccacggtgtttacaaatgtttcccaac 11031315  T
Q  482 acaaga 487  Q
     |||||    
T  11031314 ccaaga 11031309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 469
Target Start/End: Original strand, 19072789 - 19073173
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa------cagacctagatctaagtatgaagcaacatcagacacataatcaaag 183  Q
    |||||||||||||||||||  ||||||| ||||| ||||||||||||       |||||||| |||||||| |  ||||||| || |  ||||||||||     
T  19072789 aaaggaagtagtaatcaatagataaagt-gtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaa 19072887  T
Q  184 caacaaagataagcaa-gaagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctc 281  Q
    ||| |||||||||||| ||| | |||||   ||||||||||  |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  ||||||    
T  19072888 caataaagataagcaatgaaagaaaggaacaaacacaccaaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gctctc 19072985  T
Q  282 cgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacc 380  Q
    | || ||||| ||| | | || ||||||   |||||||||||||| | |||  ||| ||||| ||||||   |||||||||| ||||| | |  |||||     
T  19072986 caatccactaagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaatacctaatttctacccattttgt--gtcact 19073083  T
Q  381 cgcactcacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    | ||||| ||| |||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| |||||||||||||||    
T  19073084 cacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaa 19073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 469
Target Start/End: Original strand, 19120679 - 19121063
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa------cagacctagatctaagtatgaagcaacatcagacacataatcaaag 183  Q
    |||||||||||||||||||  ||||||| ||||| ||||||||||||       |||||||| |||||||| |  ||||||| || |  ||||||||||     
T  19120679 aaaggaagtagtaatcaatagataaagt-gtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaa 19120777  T
Q  184 caacaaagataagcaa-gaagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctc 281  Q
    ||| |||||||||||| ||| | |||||   ||||||||||  |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  ||||||    
T  19120778 caataaagataagcaatgaaagaaaggaacaaacacaccaaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gctctc 19120875  T
Q  282 cgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacc 380  Q
    | || ||||| ||| | | || ||||||   |||||||||||||| | |||  ||| ||||| ||||||   |||||||||| ||||| | |  |||||     
T  19120876 caatccactaagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaatacctaatttctacccattttgt--gtcact 19120973  T
Q  381 cgcactcacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    | ||||| ||| |||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| |||||||||||||||    
T  19120974 cacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaa 19121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 326
Target Start/End: Complemental strand, 27104602 - 27104367
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa-cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 188  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||| |||||||| |||||||| |  ||||||| || |  |||||||||||||| |    
T  27104602 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaata 27104504  T
Q  189 aagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattc 287  Q
    ||||||||||| |||   |||||   |||||||||| |||||| || ||||||| | ||| || ||||| | ||| ||  |||||  |||||||| || |    
T  27104503 aagataagcaatgaaataaaggaacaaacacaccaagattgttgacacagttcggtccaatataacctaatctggggg--agagagcagctctccaatcc 27104406  T
Q  288 actatgataagaatgatacaaatatgttacaagaaatta 326  Q
    |||||||| | | || ||||||   ||||||||||||||    
T  27104405 actatgatgaaagtgttacaaaagagttacaagaaatta 27104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 48382663 - 48382607
Alignment:
Q  139 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 195  Q
    |||||||||||||||| |||||||||| || | ||||||| ||||||||||||||||    
T  48382663 agacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataa 48382607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 6354300 - 6354261
Alignment:
Q  431 cttcctctaatgagatctcactacccaaggtgtttacaaa 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  6354300 cttcctctaatgagatctcactacccaaagtgtttacaaa 6354261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 48382389 - 48382346
Alignment:
Q  422 ttttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  48382389 ttttttatccttcctttaatgagatctcactacccaaggtgttt 48382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 9022852 - 9022758
Alignment:
Q  373 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||| || |||||||||||||||| ||||||||  ||| ||||||| |||||||| |||||  |  ||| ||||||||||  |||||||||||||    
T  9022852 aagtcaaccacactcacaatgaatcctaagagaaa--actcaaggaagcttttttatccttccaatggtgaaatctcactacgaaaggtgtttacaa 9022758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 498
Target Start/End: Complemental strand, 25116623 - 25116523
Alignment:
Q  400 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactaccc-aaggtgtttacaaatggttcccaacacaagaaa-aaactctc 497  Q
    ||||||||||||||||| ||  ||||| || ||||   |||||| |||||||||||| || ||||||||||||| |||||||| ||| ||| ||||||||    
T  25116623 aagagaaaacactaaagaaatttttttaatccttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctc 25116524  T
Q  498 a 498  Q
    |    
T  25116523 a 25116523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 490
Target Start/End: Original strand, 32889558 - 32889703
Alignment:
Q  342 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 441  Q
    |||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| ||| ||||  |||| |  |||||  |  |    
T  32889558 aagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac-aaaagaag-cttttgaaccttccaatggt 32889655  T
Q  442 gagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaa 490  Q
    || ||||||||||||||||||||||| |||| |||||||| ||| ||||    
T  32889656 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaaaaaa 32889703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 15864726 - 15864805
Alignment:
Q  387 cacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 466  Q
    |||||||||||| |||| |||||| || || |||  |||| ||  || ||||||||||||||||||||||||| ||||||    
T  15864726 cacaatgaatcctaagaaaaaacaatagagaaagcattttgatcatttctctaatgagatctcactacccaagatgttta 15864805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 17345766 - 17345707
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaat-aaagtagtctcaagcaacaacaa 136  Q
    |||||||| ||  ||||||||||||||||||||| | ||||||| |||||||||||||||    
T  17345766 agatgtgtggagcaaaggaagtagtaatcaatgagtaaaagtagcctcaagcaacaacaa 17345707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 487
Target Start/End: Complemental strand, 27104322 - 27104236
Alignment:
Q  400 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    |||||||||||| |||||||| ||||| ||||||||  |  ||| |||||||||||||||||| |||  |||| |||||||| |||||    
T  27104322 aagagaaaacacaaaaggaagctttttgattcttccaatggtgaaatctcactacccaaggtgctta-taatgtttcccaacccaaga 27104236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 48591092 - 48591013
Alignment:
Q  39 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagt 118  Q
    |||||||||||||||  |||||| | | ||||| |||||||||||||  | |||| ||| |||||||||||||| |||||    
T  48591092 tgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48591013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 48600787 - 48600708
Alignment:
Q  39 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagt 118  Q
    |||||||||||||||  |||||| | | ||||| |||||||||||||  | |||| ||| |||||||||||||| |||||    
T  48600787 tgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48600708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 50521350 - 50521291
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaat-aaagtagtctcaagcaacaacaa 136  Q
    |||||||| || |||||||||| ||||||||||| | ||||||||||||| |||||||||    
T  50521350 agatgtgtggagtaaaggaagtggtaatcaatgagtaaaagtagtctcaaacaacaacaa 50521291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 775584 - 775706
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||| ||| |||||| ||    
T  775584 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacatcaagattgttgac 775683  T
Q  234 ccagttcgatgcaaaatgaccta 256  Q
    ||| |||| | ||| ||||||||    
T  775684 ccaattcggtccaatatgaccta 775706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 2210624 - 2210697
Alignment:
Q  390 aatgaatccaaagagaaaacactaaaggaag-attttttattcttcctctaatgagatctcactacccaaggtg 462  Q
    ||||||| | ||||||||||| ||||| ||  |||||| ||  || ||||||||||||||||||||||||||||    
T  2210624 aatgaattctaagagaaaacaataaagaaaacatttttgatcatttctctaatgagatctcactacccaaggtg 2210697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 9024059 - 9023956
Alignment:
Q  96 aagtagtaatcaatgaataaagtagtctcaagcaa---caacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaaga 192  Q
    |||| |||||||||| ||||||||| | |||||||   ||||||||| ||||| |||||||| |  ||||||| || |  ||||||||| |||| |||||    
T  9024059 aagtggtaatcaatggataaagtagccccaagcaataacaacaaacatacctaaatctaagtgtatagcaacaccacaagcataatcaatgcaataaaga 9023960  T
Q  193 taag 196  Q
    ||||    
T  9023959 taag 9023956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 9476211 - 9476295
Alignment:
Q  173 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 256  Q
    |||||||||||||| |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  9476211 cataatcaaagcaaaaaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 9476295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 7e-69; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 130 - 519
Target Start/End: Complemental strand, 28770964 - 28770576
Alignment:
Q  130 acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaa-ggagacaacacaccaacattg 228  Q
    |||||||| |||||||||||||||| |||||||||| || |  |||||||||||||| ||| ||||  |||||| ||| ||| |||| ||||||| |||     
T  28770964 acaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaaaggaaacaagacaccaatattt 28770865  T
Q  229 tttacccagttcgatgcaaaa-tgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaa 327  Q
    |||||| | | || |  |||| ||||||||| ||||||| |||| |  |||||||||| | ||| ||||||||||||||||| || |||||||||||||     
T  28770864 tttaccta-tacggtctaaaaatgacctactctggaggatagagca--gctctccgatcctctacgataagaatgatacaaagatattacaagaaattag 28770768  T
Q  328 catattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttt 427  Q
    | ||   |||||||||||||||| ||||||||||| ||||| || ||||||  | ||||| |||||||||| ||||||||||||||||||||  ||||||    
T  28770767 cttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaacactaaaggaaactttttt 28770668  T
Q  428 attcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa 519  Q
    || ||||  |||||||||||||||||||||||||||||||||||| || |||||  |||||||||| |||| ||||||  | ||||||||||    
T  28770667 atccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaaaaaacactcaccaaagacactcaaccctaaa 28770576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 128 - 519
Target Start/End: Original strand, 3277908 - 3278294
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacatt 227  Q
    |||||||||| ||| |||||||||||| ||||||||||  | | ||||| ||||||||| ||||||||| || ||| || ||| | |||||| |||||||    
T  3277908 caacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataagaaataagagagggaaaaaacacatcaacatt 3278007  T
Q  228 gtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaa 327  Q
    |||||| || |||  | |||||||||||||| ||||||| |||| ||  | || ||||  |||||||| ||||||||| ||| | |||| |||||||||     
T  3278008 gtttactcatttccgtccaaaatgacctactatggaggagagagcat--cacttcgatctactatgatgagaatgata-aaagaggttataagaaattag 3278104  T
Q  328 catattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttt 427  Q
    | ||    ||||||| ||||||||||  ||||||   |||| || || |||| | ||||||||||||| || |||||||||| |||||||||| |||||     
T  3278105 cttaaaacctcacaa-gaacaaattccgatttcttctcatttttcaattcactcacactcacaatgaaccctaagagaaaacgctaaaggaagttttttg 3278203  T
Q  428 attcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa 519  Q
    || | |||| |||||| ||||||||| |||||||||||||||||| || ||||| |||| | || |||||||||| ||| | ||||||||||    
T  3278204 atccgtcctataatgaaatctcactatccaaggtgtttacaaatgttttccaacccaag-agaatctctcatcaacgatactcaaccctaaa 3278294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 128 - 469
Target Start/End: Complemental strand, 2869886 - 2869544
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaag-aagggaaggagacaa-cacaccaaca 225  Q
    |||||||||| ||||||| |||||||| |  ||||||| || |  |||| ||||||||||||||||||||||  || |||||   |||| |||||||| |    
T  2869886 caacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaacaaagataagcaaataaaggaagagaacaaacacaccaata 2869787  T
Q  226 ttgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatt 325  Q
    |||||||||||||||| | ||| |||||||||| | | ||| ||||  ||||||||| || ||||| ||| | | |||||||||   |||||||||||||    
T  2869786 ttgtttacccagttcggtccaatatgacctactctaggggagagag--tagctctccaatccactaagatgaaagtgatacaaaggagttacaagaaatt 2869689  T
Q  326 aacatattcgctcacaaagaacaaattc-taatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 424  Q
    | | ||   ||||||||||||||||  | ||||||||| ||||| || ||||||||| ||||| |||||||||| ||||||||||||||| ||||| |||    
T  2869688 agcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactctcaatgaatcctaagagaaaacactaacggaagcttt 2869589  T
Q  425 tttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    || ||||||||  |   || |||||||||||||| ||||||||||    
T  2869588 ttgattcttccaatggcgaaatctcactacccaatgtgtttacaa 2869544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 275 - 505
Target Start/End: Complemental strand, 18674447 - 18674216
Alignment:
Q  275 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 374  Q
    |||||||||||  ||||||| |||| |||||| ||   ||||||||||||||   ||   ||||||||||||||||   ||||||||||||||| || ||    
T  18674447 agctctccgatctactatgacaagagtgataccaaggggttacaagaaattagtttaaaagctcacaaagaacaaaccataatttctatccatttttcaa 18674348  T
Q  375 gtcacccgcactca-caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatgg 473  Q
    ||||||| ||||||  ||||||||  ||||||||||| ||||||||| ||||| || ||| |  |||||| |||||||| | |||||||||||| ||||     
T  18674347 gtcacccacactcataaatgaatcataagagaaaacattaaaggaagctttttgatcctt-caataatgaaatctcactgctcaaggtgtttacgaatgt 18674249  T
Q  474 ttcccaacacaagaa-aaaactctcatcaaaga 505  Q
    |||||||| ||||||  ||||||||| ||||||    
T  18674248 ttcccaacccaagaattaaactctcaccaaaga 18674216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 326
Target Start/End: Complemental strand, 16388760 - 16388465
Alignment:
Q  38 atgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca-------- 129  Q
    ||||||||||||||||| |||||| | | ||||| ||||||||||||| ||  |||   ||||||||||||||| |||||||||||||||||            
T  16388760 atgttgtgaattcaaacaaataatcacatcaata-aacttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaagcagcagcaac 16388662  T
Q  130 -acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattg 228  Q
     ||||||||||||||||||| || || ||||||||||  | |  ||||  |||||||| |||||||||  |||| ||| | | |||||||||||| ||||    
T  16388661 aacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaataaagataagagagaaaggaggaaaacaacacaccaatattg 16388562  T
Q  229 tttacccagttcgatgc-aaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    ||||||||||| | | | ||||||||||||| | ||||  |||||  ||||||||  | |||| ||||||||  |||| ||| | ||||||||||||||    
T  16388561 tttacccagtttggtccaaaaatgacctactctagagg--agagagcagctctcctttccactttgataagagagatagaaagaggttacaagaaatta 16388465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 469
Target Start/End: Complemental strand, 14699112 - 14698861
Alignment:
Q  214 aacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatg 313  Q
    |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | || | ||||||   |    
T  14699112 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactatgatga-aaggttacaaaagag 14699016  T
Q  314 ttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacact 412  Q
    ||||||||||||| | |||  ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| |||||||||| ||||||||||||     
T  14699015 ttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaatgaatcctaagagaaaacaca 14698918  T
Q  413 aaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||| ||||| || |||||  || ||| |||||||||||||||||||||||||    
T  14698917 aaaggaagctttttgatccttccaatagtgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 335 - 429
Target Start/End: Complemental strand, 15903876 - 15903782
Alignment:
Q  335 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttat 429  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||| ||||| |||||||||| | |||||||||| |||| ||  ||||||||    
T  15903876 gctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactctcaatgaatcctatgagaaaacacaaaagaaatcttttttat 15903782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 16388259 - 16388355
Alignment:
Q  39 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 136  Q
    |||||||||||| ||| |||||| | ||| ||| ||||||||||||| ||  |||| |||||||||||||||||||||||||||||||||| ||||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgata-aacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaa 16388355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 487
Target Start/End: Complemental strand, 33528868 - 33528459
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaac-----aaacagacctagatctaagtatgaagcaacatcagaca 172  Q
    |||||||| ||  ||||||||| |||||||||| |||||||   | |||||||||||     |||||||||||||||||| | |  ||||||| || |      
T  33528868 agatgtgtggagcaaaggaagtggtaatcaatggataaagtgtccccaagcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaag 33528769  T
Q  173 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 271  Q
    |||||||||||||| |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||  ||||||||    
T  33528768 cataatcaaagcaataaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatatg--ggaaagag 33528671  T
Q  272 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatt 371  Q
    |  | | |||| || ||||||||| | | || ||||||   |||||||||||||| | |||  |||    ||||||||   |||||||||| ||||  ||    
T  33528670 agcaaccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttataagct----aagaacaagacctaatttctacccat--tt 33528577  T
Q  372 taagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttaca 468  Q
    |  |||||||  ||||   | ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||| ||||||||     
T  33528576 tgtgtcacccaaactctcaataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaatgtgtttac- 33528478  T
Q  469 aatggttcccaacacaaga 487  Q
    |||| |||||||| |||||    
T  33528477 aatgtttcccaacccaaga 33528459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 487
Target Start/End: Original strand, 13569234 - 13569591
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| |||||| | |||||||||||||  || |||| || |  |||||||||||| |||||||||| ||| ||| | |||||   |||||||||| ||    
T  13569234 caacaaaaaacaggcttagatctaagtatagagaaacaccacaagcataatcaaagc-acaaagataatcaatgaaagaaaggaataaacacaccaaaat 13569332  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    |||| |||||||||| | ||| |||||||| | ||| ||  |||||  |||||||| || ||||||||| | | || ||||||   ||||||||||||||    
T  13569333 tgttgacccagttcggtccaatatgacctaatctggggg--agagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 13569430  T
Q  327 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca--atgaatccaaagagaaaacactaaaggaagatt 423  Q
     | |||  | | ||| ||||||||   |||||||||| || || |||  ||||||| | ||||||  |||||||| |||||||||||| |||||||| ||    
T  13569431 gcttataagtttacacaagaacaagacctaatttctaccctttgttt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctt 13569528  T
Q  424 ttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||| || |||||  |  ||| ||||||||| ||||||||||||  |||| |||||||| |||||    
T  13569529 tttgatccttccaatggtgaaatctcactatccaaggtgttta-taatgtttcccaacccaaga 13569591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 469
Target Start/End: Original strand, 33118048 - 33118380
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |  ||||||||||| || |||||||||||| ||| | |||||   |||||||||| ||||||  |    
T  33118048 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttggc 33118147  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
     ||||||| | ||| |||||||| ||||| ||| |||| |  || |||| || ||||||||| | |  | ||||||   |||||||||||||| | |||     
T  33118148 tcagttcggtccaatatgacctaatttgggggagagagca--gccctccaatccactatgatgaaagagttacaaaatagttacaagaaattagcttata 33118245  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 432  Q
     ||| ||| ||||||||    ||||||||| ||||| | |  ||||||| ||||| |||||||||  |||||||||||| |||||||| ||||| || ||    
T  33118246 agcttacacaagaacaagacttaatttctacccattttgt--gtcaccctcactctcaatgaatcttaagagaaaacacaaaaggaagctttttgatcct 33118343  T
Q  433 tcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||  |   || |||||||||||||||||||||||||    
T  33118344 tccaatggcgaaatctcactacccaaggtgtttacaa 33118380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 469
Target Start/End: Complemental strand, 8390341 - 8390001
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| || ||||||||||||||||| |  ||||||| || |  ||||||||||||| ||||||||||| | ||| | || ||   |||||||||| ||    
T  8390341 caacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaagca-caaagataagcgatgaaagaaatgaacaaacacaccaaaat 8390243  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    |||| |||||||||| | |||||||||||| ||||| ||| |||| |  ||||||| || ||||||||| | | || || |||   ||||||||||||||    
T  8390242 tgttgacccagttcggtccaaaatgacctaatttgggggagagagca--gctctccaatccactatgatgaaagtgttaaaaaagagttacaagaaatta 8390145  T
Q  327 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagatt 423  Q
     | ||   |||  || ||||||||   |||||||||| ||||| | |  ||||||| | ||||||||  |||||| |||||||||||| | |||||| ||    
T  8390144 gcttacaagcttgcacaagaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaagaggaagctt 8390047  T
Q  424 ttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    ||| ||||||||  |  | | ||||||||| |||||||||||||||    
T  8390046 tttgattcttccaatggtaaaatctcactatccaaggtgtttacaa 8390001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 469
Target Start/End: Original strand, 31055892 - 31056288
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  31055892 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 31055990  T
Q  172 acataatcaaagcaacaaagataagcaag--aagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaa 268  Q
     |||||||||||||| ||||||||||||   |||  |||||   ||||||||||  |||||| ||| |||||| | ||| |||||||| | | | ||| |    
T  31055991 gcataatcaaagcaataaagataagcaatgaaagaaaaggaacaaacacaccaaagattgttgacctagttcggttcaatatgacctaatctaggggaga 31056090  T
Q  269 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccat 367  Q
    ||| |  ||||||| || ||||| ||| | | || ||||||   ||||||| |||||| | |||  ||| ||||| ||||||   |||||||||| ||||    
T  31056091 gagca--gctctccaatccactaagatgaaagtgttacaaaagagttacaataaattagcttataagcttacaaaagaacaagacctaatttctacccat 31056188  T
Q  368 tatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac 467  Q
    | | |  ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||| |  |  ||| |||||||||||||||||||||||    
T  31056189 tttgt--gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttac 31056286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 487
Target Start/End: Original strand, 34388771 - 34389113
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||||||||||||||| |  ||||||| || |  || |||||||||| ||||||||| ||| ||| | |||||   |||||||| | |||||| ||    
T  34388771 aaacagacctagatctaagtgtagagcaacaccacaagcaaaatcaaagca-caaagataaacaaagaaagaaaggaacaaacacaccgagattgttgac 34388869  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    ||| |||| | ||| |||||||| | ||| ||| ||||  ||||||||| || ||||||||| | | || ||||||   |||||||||||||| | ||      
T  34388870 ccaattcggtccaatatgacctaatctgggggagagag--tagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta-- 34388965  T
Q  334 cgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattc 431  Q
        ||||| ||||||   |||||||||| ||||| | |  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| || |    
T  34388966 ----cacaa-gaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatcc 34389058  T
Q  432 ttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  34389059 ttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 34389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 469
Target Start/End: Complemental strand, 2838124 - 2837881
Alignment:
Q  225 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 324  Q
    |||||| |||||||||| | ||| |||||||||| ||| ||| |||| | |  ||||| || |||||  || | | ||||||||||  ||||||||||||    
T  2838124 attgttgacccagttcggtccaatatgacctactctgggggagagagcaca--tctccaatccactaaaatgaaagtgatacaaatgagttacaagaaat 2838027  T
Q  325 taacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 424  Q
    ||  | |   |||||||||||||| |  ||||||| |  ||||| || | ||||||| |  || |||||||||| |||||||||||||||||||| ||||    
T  2838026 tagtacaagagctcacaaagaacacaacctaatttttgcccatttttcatgtcacccaccttctcaatgaatcctaagagaaaacactaaaggaatattt 2837927  T
Q  425 tttattcttcctctaatgaga-tctcactacccaaggtgtttacaa 469  Q
    ||||| |||||  |  ||| | |||||||| |||||||||||||||    
T  2837926 tttatccttccaatggtgaaattctcactatccaaggtgtttacaa 2837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 469
Target Start/End: Original strand, 39482836 - 39483178
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| ||||||||||| |||||||| |  | ||||| || |  ||||| |||||||| |||||||| ||| ||| |  ||||   |||||||||| ||    
T  39482836 caacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcataaccaaagcaataaagataaacaatgaaagagaggaacaaacacaccaagat 39482935  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    |||| ||| |||||| | ||| |||||||| | ||| ||| |||| |  |  |||| || ||||||||| | |||| ||||||   ||||||||||||||    
T  39482936 tgttgacctagttcggtccaatatgacctaatatgggggagagagca--ggcctccaatccactatgatgaaaatgttacaaaagagttacaagaaatta 39483033  T
Q  327 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat---gaatccaaagagaaaacactaaaggaagat 422  Q
     | |||  ||| ||| ||||||||   |||||||||| |||||  ||| ||||||| ||||| ||||   |||||| |||||||||||| |||||||| |    
T  39483034 gcttataagcttacacaagaacaagacctaatttctacccatt--ttatgtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaagtt 39483131  T
Q  423 tttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||| ||  ||||  |  ||| |||||||||||||||||||||||||    
T  39483132 ttttgatcattccaatggtgaaatctcactacccaaggtgtttacaa 39483178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 21630111 - 21630207
Alignment:
Q  390 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  21630111 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 21630207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 338 - 487
Target Start/End: Complemental strand, 41586532 - 41586385
Alignment:
Q  338 cacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctc 437  Q
    ||||||||||||| | ||||||||| | ||| || ||||||| |  ||||| |||| |||| ||||||||||| ||||| ||  ||||| ||||| |  |    
T  41586532 cacaaagaacaaactttaatttctacctatttttcaagtcactc--actcagaatggatcctaagagaaaacattaaagaaaactttttgattctcctcc 41586435  T
Q  438 taatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    || | | ||||||||||||||||||||||||| || || ||||| |||||    
T  41586434 tagtaaaatctcactacccaaggtgtttacaactgttttccaacccaaga 41586385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 17865371 - 17865467
Alignment:
Q  390 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  17865371 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttctatttgtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 17865467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 469
Target Start/End: Original strand, 8039923 - 8040309
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 184  Q
    ||||||||| |||||||||  ||||||| |||| |||||||||||||     ||||||||| |||||||| |  ||||||| || |  ||||||||||||    
T  8039923 aaaggaagtggtaatcaatagataaagt-gtcttcaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagc 8040021  T
Q  185 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 283  Q
    || |||||||||||| |||||  |||| | || ||| ||| |||||| |||||||||  | ||| |||||||| | ||| ||  |||||  ||||||||     
T  8040022 aataaagataagcaatgaaggagaggaaaaaatacatcaagattgttgacccagttcagtccaatatgacctaatctggggg--agagagcagctctcca 8040119  T
Q  284 attcactatgataagaatgatacaaa--tatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacc 380  Q
    || ||||||||| | | || ||||||     |||||||||||||| | ||   ||| ||| ||||||||   |||||||||| ||||  |||  ||||||    
T  8040120 atccactatgatgaaagtgttacaaaagagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccat--tttgtgtcacc 8040217  T
Q  381 cgcactcaca--atgaatccaaagag-aaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    | | ||||||  |||||||| ||||| ||||||  |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  8040218 cactctcacaatatgaatcctaagagaaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 8040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 256
Target Start/End: Original strand, 20522070 - 20522254
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| |||||||||| ||||||| ||||| |||||| |||||     | |||| ||||||||||| |  ||||||| || |     
T  20522070 agatgtgtggagaaaaggaagtggtaatcaatggataaagt-gtctccaagcaaaaacaacaaaaaaagacatagatctaagtgtagagcaacaccacaa 20522168  T
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 256  Q
     |||||||||||||| ||||||||| || ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  20522169 gcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 20522254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 414
Target Start/End: Complemental strand, 1345635 - 1345448
Alignment:
Q  225 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcact-atgataagaatgatacaaatatgttacaagaaa 323  Q
    |||||| |||||||||| | ||| |||||||||| ||| ||| |||| |   ||||||||| |||| | ||| | | ||||||||||  ||| |||||||    
T  1345635 attgttgacccagttcggtccaatatgacctactctgggggagagagcac--ctctccgatccacttaagatgaaagtgatacaaatgagttgcaagaaa 1345538  T
Q  324 ttaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaa 414  Q
    ||| || ||  ||||||||| |||| |  |||||||||| ||||| || | ||||||| ||||| |||||||||  || ||||||||||||    
T  1345537 ttagcacatgagctcacaaa-aacacaacctaatttctacccatttttcatgtcacccccactctcaatgaatcataaaagaaaacactaa 1345448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 487
Target Start/End: Complemental strand, 11049522 - 11049487
Alignment:
Q  452 tacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11049522 tacccaaggtgtttacaaatgtttcccaacacaaga 11049487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 426
Target Start/End: Original strand, 27139853 - 27140004
Alignment:
Q  275 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 374  Q
    |||||||| ||||||||||| || | ||||||||| |||||||| ||||||||  |    |||||||||| |||||  ||||||||||  |||  || ||    
T  27139853 agctctccaattcactatgaaaatagtgatacaaaaatgttacaggaaattaaatttaaagctcacaaagtacaaaccctaatttctacacatatttcaa 27139952  T
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 426  Q
    |||||  | || || ||||||||| || |||||||| ||||| ||| |||||    
T  27139953 gtcacttgaacccaaaatgaatcctaatagaaaacaataaagaaagcttttt 27140004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 35397639 - 35397694
Alignment:
Q  353 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaa 408  Q
    |||||||||||||||| || ||||||||| || || |||||||||| |||||||||    
T  35397639 ctaatttctatccatttttcaagtcacccacaatctcaatgaatcctaagagaaaa 35397694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 10707182 - 10707104
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| |||| ||||||||||||||||||||    
T  10707182 atgaatcctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctaactacccaaggtgtttacaa 10707104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 27149245 - 27149207
Alignment:
Q  370 tttaagtcacccgcactcacaatgaatccaaagagaaaa 408  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  27149245 tttaagtcacccacactcacaatgaatcctaagagaaaa 27149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 487
Target Start/End: Complemental strand, 23078400 - 23078306
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||| || ||||||| |||| |||||||| ||||  || |||||  | |||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  23078400 atgaaccctaagagaagacacaaaaggaagcttttg-atccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 173 - 498
Target Start/End: Complemental strand, 34670810 - 34670488
Alignment:
Q  173 cataatcaaagcaacaaagataagcaagaaggg--aaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
    |||| ||||||||||||||||||| || || ||  ||| | ||||||| |  |||||||||| |||||||| | |||||||||||||| || |||| | |    
T  34670810 catattcaaagcaacaaagataagaaataaagggaaagaaaacaacacgcatacattgtttatccagttcggtccaaaatgacctactatgaaggagata 34670711  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 370  Q
    | |  |||||| ||| ||||||||||||   | |||||| | |||||||||||||| | || | |||||||||||||||||  ||||||||||||||| |    
T  34670710 gca--gctctctgatccactatgataag---ggtacaaagaggttacaagaaattagcttaatagctcacaaagaacaaatcataatttctatccatttt 34670616  T
Q  371 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaa 470  Q
    | ||||||| | |||||||||||||||| ||||||||||||||||| ||  ||||  || ||||||||||||||||||||||||||||| || |||||||    
T  34670615 tcaagtcactcacactcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaa 34670516  T
Q  471 tggttcccaacacaagaaaaaactctca 498  Q
    || ||| |||| ||||||||||||||||    
T  34670515 tgtttctcaactcaagaaaaaactctca 34670488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 39 - 487
Target Start/End: Original strand, 37781673 - 37782126
Alignment:
Q  39 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaaca--- 135  Q
    |||||||||||||||| |||||| |||  |||| |||||||| |||| ||  ||| |||||||| || ||||| |||||||   |||| ||||||||       
T  37781673 tgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatgagtaaagtatcatcaatcaacaacatca 37781772  T
Q  136 ---aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgttta 232  Q
       || |||||||||||||||| |||||||||| || |  |||| ||||||||||||||||||| || ||  |||| | |||||| ||||| ||||||||    
T  37781773 acaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaataatagaagaaaacaacaaaccaatattgttta 37781872  T
Q  233 cccagttcgatgcaaa-atgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacata 331  Q
    ||||||||| |  ||| ||||||||||| ||||   ||||| || |||||| || |||||| |||| | ||||||||| | |||||||||||||| | ||    
T  37781873 cccagttcggtttaaatatgacctacttcggag---agagagtaactctccaatccactataataaaagtgatacaaagaggttacaagaaattagctta 37781969  T
Q  332 ttcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactc-acaatgaatccaaagagaaaacactaaaggaagattttttatt 430  Q
        ||||||||||||||||  ||||||||| ||||| || ||||||||  |||||   ||||||||  |||||||||||||||| ||   ||||| |||    
T  37781970 aaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagactttttgatt 37782069  T
Q  431 cttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    |||||  |||||| |||||||||||||||||||||||||||| || ||||| |||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaaatgttttccaacccaaga 37782126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 39 - 531
Target Start/End: Complemental strand, 873809 - 873307
Alignment:
Q  39 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaag----------- 127  Q
    ||||||||||| |||| |||||| | ||||||| ||||||||||| |||| ||| |||||| |||||||||||  ||||  |||| |||               
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaagaggtcttaagaaacaaaaaca 873710  T
Q  128 -caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacat 226  Q
     ||||||||||| ||| || |||||||| |||| ||||| || | ||||| ||||| |||| |||||||| || |||  ||||| |||||||||||| ||    
T  873709 acaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaagataaggaaacaacacaccaatat 873610  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    | ||||| ||||||| |   |||| || ||| || ||   ||||||  | ||||||||| ||||||||| |||||||||| |||| ||||||||||||||    
T  873609 tatttactcagttcggttttaaattacatacattaga---aagagagcaactctccgatccactatgattagaatgataccaataggttacaagaaatta 873513  T
Q  327 acatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 426  Q
    || ||   |||| |||| ||||||| ||||||||||  |||  ||  |||||||| || ||||| | | ||  |||||||||||| ||| |||| |||||    
T  873512 acttaaaagctcgcaaataacaaatcctaatttctactcatatttcgagtcacccacagtcacattaagtcttaagagaaaacacaaaatgaagcttttt 873413  T
Q  427 tattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa-ttccct 525  Q
     || || ||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||||| | ||| ||||||  | |||||||||| ||||||    
T  873412 gatcctccctctaatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaaaaattatcaccaaagacactcaaccctaaagttccct 873313  T
Q  526 cctttg 531  Q
     |||||    
T  873312 tctttg 873307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 132 - 466
Target Start/End: Complemental strand, 42599762 - 42599429
Alignment:
Q  132 aacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtt 230  Q
    |||||||| |||||||||||| | |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| ||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgtt 42599663  T
Q  231 tacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacat 330  Q
     ||||| |||  | ||| ||||| || | ||| ||| |||||  | | |||| || ||||| ||| | |||| |||||  | |||||||||||||| | |    
T  42599662 gacccaattcagtccaatatgacataatatgggggagagagagcaaccctccaatccactaagatgaaaatgttacaatga-gttacaagaaattagctt 42599564  T
Q  331 attcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttat 429  Q
    ||  ||| ||||| ||||||   |||||||||| ||||| | |  ||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||    
T  42599563 ataagcttacaaaagaacaagacctaatttctacccattttgt--gtcacccgcactctcaatgaatcctaagagaaaacacaaaaggaagtttttttat 42599466  T
Q  430 tcttcctctaatgagatctcactacccaaggtgttta 466  Q
     |||||  |  ||| ||||||||||||||||||||||    
T  42599465 ccttccaatggtgaaatctcactacccaaggtgttta 42599429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 487
Target Start/End: Original strand, 10047242 - 10047643
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 184  Q
    ||||||||| |||||||||| ||||||| ||||| |||||| |||||     | |||| ||||||||||| |  ||||||| || |  ||||||||||||    
T  10047242 aaaggaagtggtaatcaatggataaagt-gtctccaagcaataacaacaaaaatagacatagatctaagtgtagagcaacaccacaagcataatcaaagc 10047340  T
Q  185 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 283  Q
    || |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  || ||||     
T  10047341 aataaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gccctcca 10047438  T
Q  284 attcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccg 382  Q
    || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| ||||||||   |||||||||| ||||| | |  |||||||     
T  10047439 atccactatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcaccca 10047536  T
Q  383 cactcacaat---gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttccca 479  Q
    ||||| ||||   |||||| |||| ||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| ||||||    
T  10047537 cactctcaataatgaatcctaagacaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttccca 10047635  T
Q  480 acacaaga 487  Q
    || |||||    
T  10047636 acccaaga 10047643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 353 - 487
Target Start/End: Original strand, 5112366 - 5112499
Alignment:
Q  353 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 452  Q
    ||||||| || | ||| |||||||||| | |||||||||||||||| |||||||||||  |||||||| ||||| || |||||  |  ||| ||||||||    
T  5112366 ctaatttgtacctattttttaagtcactcacactcacaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcact 5112465  T
Q  453 acccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||||||||| |||| |||||||| |||||    
T  5112466 acccaaggtgtttac-aatgtttcccaacccaaga 5112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 472
Target Start/End: Original strand, 39593789 - 39593974
Alignment:
Q  285 ttcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgca 384  Q
    ||||||||||||||| ||||||||||| ||||||||||||||   ||    |||||||||||  ||  |||||||||| || ||  | ||||||| |  |    
T  39593789 ttcactatgataagagtgatacaaataagttacaagaaattagtttacaaactcacaaagaatcaac-ctaatttctacccctttgtcaagtcactcaaa 39593887  T
Q  385 ctcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 472  Q
    | |||||||||||| |||||||| |||| ||||||| |||||  |  |||||||||||||||||||| |  |||||||||||||||||    
T  39593888 cccacaatgaatcctaagagaaaccactcaaggaagctttttggtcattcctctaatgagatctcac-attcaaggtgtttacaaatg 39593974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 4956015 - 4956157
Alignment:
Q  56 aataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaac---aacaaacagacctagatctaa 152  Q
    |||||| ||||||||| ||||||||  ||| ||  |||||||||| ||||||||||  || | || ||||||||||   ||||||| || |||||| |||    
T  4956015 aataatcataccaatataacttagacatgtggagcaaaggaagtaataatcaatgagcaatgcagcctcaagcaacaacaacaaacggatctagatttaa 4956114  T
Q  153 gtatgaagcaacatcagacacataatcaaagcaacaaagataa 195  Q
    || |||||||||| || | ||||||||||||||||| ||||||    
T  4956115 gtgtgaagcaacaccacaaacataatcaaagcaacacagataa 4956157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 435
Target Start/End: Complemental strand, 1983546 - 1983187
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa------acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  |||||||||| ||||||||| ||||||| |  ||||||||||||||      || ||| || |||||||| | ||||| || || |     
T  1983546 agatgtgtggagcaaaggaagtaataatcaatggataaagtgggttcaagcaacaacaacaacaaactgacttaaatctaagtgtaaagcatcaccacaa 1983447  T
Q  172 acataatcaaagcaacaaagataagcaagaagggaaggagacaa-cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
    ||||||||||| ||||||  ||||| ||| | | ||| | |||| |||||||| || ||  |||||||||| | ||| |||||||||| ||| ||| | |    
T  1983446 acataatcaaaacaacaat-ataagaaagcaagaaagaaaacaaacacaccaatatggta-acccagttcggtccaatatgacctactatgggggagata 1983349  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 370  Q
    | |  ||||||| || ||||| ||| | | |||||||||   |||||||||||||| | |    ||||||||||||||||   |||||||||||| || |    
T  1983348 gca--gctctccaatccactaggatcaaagtgatacaaaggggttacaagaaattagcttgcaagctcacaaagaacaaaacataatttctatcc-tttt 1983252  T
Q  371 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcc 435  Q
    | ||||||||  ||||| |||||||||| |||||||||| | |||||||| |||||||| |||||    
T  1983251 tcaagtcacctacactctcaatgaatcctaagagaaaacccaaaaggaagcttttttatccttcc 1983187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 380
Target Start/End: Complemental strand, 8114843 - 8114679
Alignment:
Q  212 acaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaata 311  Q
    |||||||||||| |||||||||| | |||| |  | ||||| ||||| | |||   |||||| | |||||| || ||||||||||||||||||| |||||    
T  8114843 acaacacaccaatattgtttacctaattcggtctataatgatctactatcgag---agagaacaactctccaatccactatgataagaatgatataaata 8114747  T
Q  312 tgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacc 380  Q
     ||||||||||| | || |||   |||||||||||||||  ||||||| |||||||| || ||||||||    
T  8114746 ggttacaagaaa-tcacttataatctcacaaagaacaaaccctaatttgtatccatttttcaagtcacc 8114679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 487
Target Start/End: Complemental strand, 16623398 - 16623128
Alignment:
Q  214 aacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatg 313  Q
    |||||||||| |||||| |||||||||| | ||| |||||||| | ||||||| |||| |  ||||||| || ||||||||| | | || ||||||   |    
T  16623398 aacacaccaagattgttgacccagttcggttcaatatgacctaatctggaggagagagca--gctctccaatccactatgatgaaagtgttacaaaagag 16623301  T
Q  314 ttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca--atgaatccaaagagaaaaca 410  Q
    ||||||||||||| |  ||  ||| ||| ||||||||   |||||||||| ||||  |||  ||||||| | ||||||  |||||||| || ||||||||    
T  16623300 ttacaagaaattagctaataagcttacagaagaacaagacctaatttctacccat--tttgtgtcacccactctcacaatatgaatcctaaaagaaaaca 16623203  T
Q  411 ctaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    | ||||||||  |||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  16623202 caaaaggaag-cttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 16623128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 408
Target Start/End: Complemental strand, 18912411 - 18912276
Alignment:
Q  273 atagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattattt 372  Q
    |||||||||| || ||||||||||||| ||||||||| | | ||||||||||||   ||    |||||||||||||||  |||| || |||||||| ||     
T  18912411 atagctctccaatccactatgataagagtgatacaaaaaggatacaagaaattagtttacaaactcacaaagaacaaaccctaaattatatccatttttc 18912312  T
Q  373 aagtcacccgcactcacaatgaatccaaagagaaaa 408  Q
    ||||||| |  || |||||||||||| |||||||||    
T  18912311 aagtcactcaaacccacaatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 487
Target Start/End: Complemental strand, 39774325 - 39774140
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaag-aacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatcca 399  Q
    ||||||||||| |||||||||||||| | ||   |||||||||| |||||   |||||||||| ||| | || | ||||| | ||||| ||||||||||     
T  39774325 tgatacaaataggttacaagaaattagcttaaaagctcacaaagaaacaagacctaatttcta-ccaattttcatgtcactcacactctcaatgaatccc 39774227  T
Q  400 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||| || |||||||| ||||| ||  ||||  |  ||| | ||||||||||||||||||||| |||| |||||||| |||||    
T  39774226 aagagaaaatacaaaaggaagctttttgatcattccaatggtgaaaactcactacccaaggtgtttac-aatgtttcccaactcaaga 39774140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 487
Target Start/End: Original strand, 3777412 - 3777811
Alignment:
Q  90 taaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaag 183  Q
    |||||||||| ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  | ||| | || |  |||||||||||    
T  3777412 taaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtgtagaacaaaaccacaagcataatcaaag 3777510  T
Q  184 caacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctcc 282  Q
    || ||||||||||||| ||| | |||||   |||||||| | |||||| |||||||||| | ||| || ||||| | | ||||| ||||  |||||||||    
T  3777511 ca-caaagataagcaatgaaagaaaggaacaaacacaccgagattgttgacccagttcggtccaatataacctaatctagaggagagag--tagctctcc 3777607  T
Q  283 gattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcaccc 381  Q
     || ||||||||| | | || |||||| | ||||||||||| || | |     || ||| ||||||||  ||||||||||| ||||| | |  |||||||    
T  3777608 aatccactatgatgaaagtgttacaaaga-gttacaagaaaatagcttgcaaacttacacaagaacaagatctaatttctacccattttgt--gtcaccc 3777704  T
Q  382 gcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttccca 479  Q
     | ||||||||  |||||| ||||||||| || |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| ||||||    
T  3777705 actctcacaatatgaatcctaagagaaaatacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttccca 3777803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 469
Target Start/End: Original strand, 24333978 - 24334056
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  24333978 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 487
Target Start/End: Complemental strand, 5269131 - 5269035
Alignment:
Q  390 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| ||||||||||||| |||| |||||||| |||||    
T  5269131 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttac-aatgtttcccaacccaaga 5269035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 25861980 - 25861868
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaa-cactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatgg 473  Q
    ||||||| ||||| |||||||||| ||||||||| ||| |||||||| ||||| || |||||  |  ||| |||||||||| |||||||||||| ||||     
T  25861980 gtcacccacactctcaatgaatcctaagagaaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactactcaaggtgtttac-aatgt 25861882  T
Q  474 ttcccaacacaaga 487  Q
    |||||||| |||||    
T  25861881 ttcccaacccaaga 25861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 256
Target Start/End: Complemental strand, 25862269 - 25862085
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  25862269 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 25862171  T
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 256  Q
     |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| || ||||||| | ||| ||||||||    
T  25862170 gcataatcaaagcaataaagataagcaatgaaagaaaggaataaacacaccaagattgttgactcagttcggtccaatatgaccta 25862085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 39245899 - 39246028
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| ||    
T  39245899 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaggcataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacaccaagat 39245998  T
Q  227 tgtttacccagttcgatgcaaaatgaccta 256  Q
    |||| |||||||||| | ||| ||||||||    
T  39245999 tgttgacccagttcggtccaatatgaccta 39246028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 295
Target Start/End: Original strand, 24333717 - 24333880
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| |||||||||||||||||||| |  |||||||  ||   |||||||||||||| |||||||||||| ||| | ||| |   |||||||||| ||    
T  24333717 caacaaaaaacagacctagatctaagtgtagagcaacacaag---cataatcaaagcaataaagataagcaatgaaagaaagaaacaaacacaccaagat 24333813  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgat 295  Q
    |||| || ||||||| | ||| |||||||| ||||| ||  |||||  |||||||| || |||||||||    
T  24333814 tgttaactcagttcggtccaatatgacctaatttggggg--agagagcagctctccaatccactatgat 24333880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 38152623 - 38152517
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| |||||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  38152623 aaacagacctagatctaagtgtatagcaacaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 38152525  T
Q  234 ccagttcg 241  Q
    ||||||||    
T  38152524 ccagttcg 38152517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 3794010 - 3793932
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||| ||||| |||||| |||||||| ||||| || ||| || |  ||| |||||||||||||||||||||||||    
T  3794010 atgaatcctaagagcaaacacaaaaggaagctttttgatcctttctatggtgaaatctcactacccaaggtgtttacaa 3793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 54867096 - 54867218
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||| ||||||||||| |  ||||||| || |  ||||||||||| || |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  54867096 aaacagacatagatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 54867195  T
Q  234 ccagttcgatgcaaaatgaccta 256  Q
    |||||||| | ||| ||||||||    
T  54867196 ccagttcggtccaatatgaccta 54867218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 487
Target Start/End: Complemental strand, 6743345 - 6743250
Alignment:
Q  390 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||| |||||||||||||||| |||| |||||||| |||||    
T  6743345 aatgaatcctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcattacccaaggtgtttac-aatgtttcccaacccaaga 6743250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 42685011 - 42684974
Alignment:
Q  428 attcttcctctaatgagatctcactacccaaggtgttt 465  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42685011 attcttcctctaatgagatctcactatccaaggtgttt 42684974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 439
Target Start/End: Original strand, 36175236 - 36175321
Alignment:
Q  352 tctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctcta 439  Q
    ||||||||||| ||||| | |||||||| |  ||||||||||||||| | ||||||||| ||||||||| | ||| || |||||||||    
T  36175236 tctaatttctacccattttctaagtcacac--actcacaatgaatcctatgagaaaacattaaaggaagttgtttgatccttcctcta 36175321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 5147590 - 5147717
Alignment:
Q  136 aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacc 234  Q
    |||||||||| |||||||| |  ||||||| || | ||||||||||| ||| | |||||||||| ||| | |||||   |||||||| | |||||| |||    
T  5147590 aacagacctaaatctaagtgtagagcaacaccacaaacataatcaaaacaatagagataagcaatgaaagaaaggaacaaacacaccgagattgttgacc 5147689  T
Q  235 cagttcgatgcaaaatgacctactttgg 262  Q
    ||||||| | ||| |||||||| |||||    
T  5147690 cagttcggtccaatatgacctaatttgg 5147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 326
Target Start/End: Complemental strand, 16630865 - 16630675
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa--gaagggaaggagacaacacaccaacattgttta 232  Q
    ||||| |||||||||||||| | |||||||| || |  ||||||||||| |||||||||||||||   |||  |||||   ||||||||||  ||||| |    
T  16630865 aaacaaacctagatctaagtgtaaagcaacaccacaagcataatcaaag-aacaaagataagcaatgaaagaaaaggaacaaacacaccaaggttgttga 16630767  T
Q  233 cccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    || |||||| | ||| ||||| || | ||||||  |||||| |||||||| || ||||||||| | | || ||||||   ||||||||||||||    
T  16630766 cctagttcggtccaatatgacataatctggagg--agagaacagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 16630675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 42234574 - 42234512
Alignment:
Q  95 gaagtagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagtatgaag 160  Q
    ||||||||||||||  | ||||||||| |||||||||||| |||| |||||||||||||| |||||    
T  42234574 gaagtagtaatcaa--attaaagtagtttcaagcaacaac-aacatacctagatctaagtgtgaag 42234512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 4956232 - 4956281
Alignment:
Q  277 ctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    |||||| || ||||||||||||||||||| ||| | ||||||||||||||    
T  4956232 ctctccaatccactatgataagaatgataaaaagaggttacaagaaatta 4956281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 469
Target Start/End: Original strand, 18377489 - 18377604
Alignment:
Q  353 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 452  Q
    |||||||||| ||||| || | ||||||| |||| ||||||||||| |||| ||||||| ||| |||| ||||| || |||||  |  | | |||||| |    
T  18377489 ctaatttctacccatt-ttcatgtcacccacacttacaatgaatcctaagaaaaaacacaaaatgaagctttttgatccttccaatggtaaaatctcatt 18377587  T
Q  453 acccaaggtgtttacaa 469  Q
    |||||||| ||||||||    
T  18377588 acccaaggggtttacaa 18377604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 39 - 326
Target Start/End: Complemental strand, 16265 - 15983
Alignment:
Q  39 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaac 138  Q
    |||||||||||  |||||||||| | ||||||| ||||||||||||| ||  ||||||||||||||||||||     |||||| |||||||||||||||     
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatg-----agtagtttcaagcaacaacaaat 16171  T
Q  139 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagat-aagcaagaagggaag-gagacaacacaccaacattgtttaccca 236  Q
      |||||||||||||| |||| ||||| || | ||||| |||||||||||||||| |||  |||| |||||  | |||||||||||| ||| ||||||||    
T  16170 ttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataaagagagaaaggaagaaaaacaacacaccaatattatttaccca 16071  T
Q  237 gttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    ||||| | |||||| | ||||| |||||  ||||||| | | |||  || ||||||||||||| | ||||||| ||||||||||||||||    
T  16070 gttcggtccaaaataatctactatggag--aagagaacaacactctaatccactatgataagagttatacaaagatgttacaagaaatta 15983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 66 - 481
Target Start/End: Original strand, 98998 - 99412
Alignment:
Q  66 ccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaa-cagacctagatctaagtatgaagcaac 164  Q
    |||||| |||||| | |||| || ||||||||||||||||||||||  |||||||||| ||||||||||||| || || || ||| |||| | ||| |||    
T  98998 ccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtcttaagcaacaacaaaacaaacatatatccaagtgtaaagaaac 99097  T
Q  165 atcagacacataatcaaagcaacaaagataagcaagaagggaaggaga-caacacaccaacattgtttacccagttcgatgcaaaatgacctactttgga 263  Q
    | |  | ||||| ||||||||||||||| ||  |||| | |||||||| ||||| || || ||||||||| | ||||  ||||||||||| |||| |  |    
T  99098 accgcaaacatactcaaagcaacaaagacaataaagaggagaaggagaacaacaaacaaatattgtttacacggttcagtgcaaaatgacatactctcaa 99197  T
Q  264 ggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctat 363  Q
    |  |||| | || || || ||| || |||||| |||||||||| | || |||||||||||||| | ||   ||||||| |||||||| | |||||||||     
T  99198 g--aagatagtaactttctgatccattatgatgagaatgatacgattaagttacaagaaattagcttagaagctcacagagaacaaactttaatttctac 99295  T
Q  364 ccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgt 463  Q
    ||||| ||||||| || | |||||||||||||||| | ||||||| || |||||||| ||||| ||  || |||||||||||| | |||||| |||||||    
T  99296 ccatt-tttaagttactcacactcacaatgaatcctatgagaaaataccaaaggaagctttttaatcatttctctaatgagatataactacctaaggtgt 99394  T
Q  464 ttacaaatggttcccaac 481  Q
    ||||| ||| || |||||    
T  99395 ttacagatgttttccaac 99412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 78 - 481
Target Start/End: Complemental strand, 33721804 - 33721399
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaaca---acaaacagacctagatctaagtatgaagcaacatcagacaca 174  Q
    |||||||| ||  |||||||||||||||| |||| ||||||||| ||||||||||   |||||||  ||||||||||||| |||| || || || | |||    
T  33721804 agatgtgtggaacaaaggaagtagtaatcgatgagtaaagtagtttcaagcaacaacaacaaacatccctagatctaagtgtgaaacatcaccacaaaca 33721705  T
Q  175 taatcaaagcaacaaagataagcaagaagggaag-gagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaa 273  Q
    || |||||||||||||||||||  |||| |||||  | |||||||||||| |||  ||| ||||||   | |||||||| ||||| ||  || |||||||    
T  33721704 tattcaaagcaacaaagataagagagaaaggaagaaaaacaacacaccaatattacttatccagtttagtccaaaatgatctactatg--gggaagagaa 33721607  T
Q  274 tagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattattta 373  Q
     | ||||| ||| ||||||||||||||| ||||||| | ||||||||||||||   ||    |||| ||||||||||  |||||||    ||||| ||||    
T  33721606 caactctctgatccactatgataagaattatacaaagaggttacaagaaattagtttaaaaactcataaagaacaaaacctaattttcccccatttttta 33721507  T
Q  374 agtcacccgcact-cacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 472  Q
     ||||| | |||| |  ||||||||| |||||||||||||||||| || ||||| ||  ||||  |||||| ||||||||| | ||||||||||||||||    
T  33721506 ggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatcattccaataatgaaatctcacta-caaaggtgtttacaaatg 33721408  T
Q  473 gttcccaac 481  Q
     ||||||||    
T  33721407 tttcccaac 33721399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 65 - 492
Target Start/End: Complemental strand, 1115361 - 1114931
Alignment:
Q  65 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa---acagacctagatctaagtatgaagc 161  Q
    ||||||| ||||||||| | | || |||| |||||||||||||||||  |||||||  ||||||||||||||   | |||| |||||||  || |||||     
T  1115361 accaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagtagcttcaagcaacaacaacaaatagacatagatctctgtgtgaagt 1115262  T
Q  162 aacatcagacacataatcaaagcaacaaagataagcaagaagggaa-ggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctacttt 260  Q
    |||| || |  | || | ||| ||||||||||| |  ||| | ||| ||| |||||||||||| |||||||||| | |||| | || |||||  |||| |    
T  1115261 aacaccacagtcttatttaaaccaacaaagatatgacagatgagaaaggaaacaacacaccaatattgtttacctaattcggtccataatgatttactat 1115162  T
Q  261 ggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttc 360  Q
       |   |||||  || ||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||   ||||| ||| ||||||  ||||||||    
T  1115161 ctgg---agagagcagatctccaatccactatgataagaatgatacaaataggttacaagaaatcaacttaaaagctcaaaaataacaaaccctaatttc 1115065  T
Q  361 tatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaa--gattttttattcttcctctaatgagatctcactacccaa 458  Q
    |||||||| || ||||||||| ||||||||||||||   |||||||||||| |||||||    |||||| | ||||| ||||||||||||||| | |||     
T  1115064 tatccatttttcaagtcacccacactcacaatgaatattaagagaaaacacaaaaggaaacttttttttctccttcccctaatgagatctcaccatccat 1114965  T
Q  459 ggtgtttacaaatggttcccaacacaagaaaaaa 492  Q
    | |||| ||||||| ||||||||  |||||||||    
T  1114964 gttgttaacaaatgtttcccaaccaaagaaaaaa 1114931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 469
Target Start/End: Original strand, 31979363 - 31979757
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| |||| |||||||||||||     ||||||||| |||||||| |  |||||||||| |     
T  31979363 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtcttcaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacatcacaa 31979461  T
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
     |||||||||||||| |||||||||||| |||    ||||   |||||||||| |||||| |||||||||| | ||| ||||| || | ||| ||| |||    
T  31979462 gcataatcaaagcaataaagataagcaatgaaatagaggaacaaacacaccaagattgttgacccagttcggtccaatatgacataatctgggggagaga 31979561  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccatta 369  Q
    | |  || |||| || ||||| ||| | | || | ||||   |||||||||||||||| |||  ||| ||||| ||||||   |||||||||| |||||     
T  31979562 gca--gccctccaatccactaagatgaaagtgttgcaaaagagttacaagaaattaacttataagcttacaaaagaacaagacctaatttctacccatt- 31979658  T
Q  370 tttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||  ||||||| ||||| |||||||||| |||||||||||| ||||||||  |||| || |||||  |  ||| |||||||||||||||||||||||||    
T  31979659 tttgtgtcacccacactctcaatgaatcctaagagaaaacacaaaaggaag-cttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 31979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 173 - 487
Target Start/End: Complemental strand, 24436117 - 24435806
Alignment:
Q  173 cataatcaaagcaacaaagataagcaagaagggaaggagacaa-cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 271  Q
    ||||| |||||||||||||||||| ||| | | ||| | |||| |||||||| || ||  |||||||||||| ||| |||||||||| | | ||| ||||    
T  24436117 cataaacaaagcaacaaagataagaaagcaagaaagaaaacaaacacaccaagatggta-acccagttcgatccaatatgacctactctaggggagagag 24436019  T
Q  272 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaa-caaattctaatttctatccattat 370  Q
     |  || ||||||| ||||| ||| | |||| |||||||   ||||||||||||| | |||  ||| ||||| || |||   |||||||||| ||||| |    
T  24436018 ca--gccctccgatccactaggatgaaaatgttacaaatgaattacaagaaattagcttataagcttacaaaaaaacaagacctaatttctacccatt-t 24435922  T
Q  371 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaa 470  Q
    |||  |||||| || ||| ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| ||    
T  24435921 ttatatcacccacattcataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aa 24435823  T
Q  471 tggttcccaacacaaga 487  Q
    || |||||||| |||||    
T  24435822 tgtttcccaactcaaga 24435806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 462
Target Start/End: Complemental strand, 10077412 - 10077027
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  10077412 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 10077314  T
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
     |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||||| |||| | ||| |||||||| | ||| ||  |||    
T  10077313 gcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccaattcggtccaatatgacctaatctggggg--aga 10077216  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcac-aaagaacaaattctaatttctatccatta 369  Q
    ||  ||| |||| || ||||||||| | | || |||||| | |||||||||||||| | |||  ||| || |||||||||   |||||||||| ||||      
T  10077215 gagcagccctccaatccactatgatgaaagtgttacaaaaaagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctacccat-- 10077118  T
Q  370 tttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtg 462  Q
    |||  ||||||| ||||  |||||||||| |||| ||||||| |||||||| ||||| || |||||  |  | | ||||||||||||||||||    
T  10077117 tttgtgtcacccacact--caatgaatcctaagataaaacacaaaaggaagctttttgatccttccaatggtcaaatctcactacccaaggtg 10077027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 469
Target Start/End: Original strand, 14521784 - 14521919
Alignment:
Q  335 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttc 434  Q
    |||||||||||||| |  ||||||||||  |||| || | ||||||| ||||| |||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  14521784 gctcacaaagaacacaacctaatttctacacatttttcatgtcacccacactctcaataaatcctaagagaaaacattaaaggaagattttttatccttc 14521883  T
Q  435 ctctaatgaga-tctcactacccaaggtgtttacaa 469  Q
    |  |  ||| | ||||||||||||||||||||||||    
T  14521884 caatggtgaaattctcactacccaaggtgtttacaa 14521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 469
Target Start/End: Original strand, 31936695 - 31936820
Alignment:
Q  342 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 441  Q
    |||||||||| |||||||||| ||||| || |  |||||| ||||| |||||||||| ||||||||||||  || |||| ||||| || |||||  |  |    
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac--aaagaagctttttgatccttccaatggt 31936792  T
Q  442 gagatctcactacccaaggtgtttacaa 469  Q
    || |||||||||||||||||||||||||    
T  31936793 gaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 5572188 - 5572078
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 474  Q
    ||||||| ||||| |||||||||| |||||||||||| ||||||||  |||| ||  ||||  || ||| ||||||||||||||||||||||| |||| |    
T  5572188 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaag-cttttgatcattccaatagtgaaatctcactacccaaggtgtttac-aatgtt 5572091  T
Q  475 tcccaacacaaga 487  Q
    ||||||| |||||    
T  5572090 tcccaacccaaga 5572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 452
Target Start/End: Complemental strand, 30518172 - 30517998
Alignment:
Q  277 ctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagt 376  Q
    ||||| ||| ||||||||||||| ||||||||| | |||||| |||| |||| ||   | ||||||||||||||   ||||||||| | ||| || ||||    
T  30518172 ctctctgatccactatgataagagtgatacaaagaggttacatgaaactaacttaaaagttcacaaagaacaaaccttaatttctacctatttttcaagt 30518073  T
Q  377 cacccgcactcac-aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 452  Q
     |||| ||||||| ||||||| |  |||||||||||||||||||| ||||| || |||||  |||||| ||||||||    
T  30518072 tacccacactcacaaatgaat-cttagagaaaacactaaaggaag-tttttgatccttccaataatgaaatctcact 30517998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 254
Target Start/End: Original strand, 22963605 - 22963732
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacat 226  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | |||||||| | ||| | |||||   |||||||||| ||    
T  22963605 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacacaccaagat 22963704  T
Q  227 tgtttacccagttcgatgcaaaatgacc 254  Q
    |||| |||||||||| ||||| ||||||    
T  22963705 tgttgacccagttcggtgcaatatgacc 22963732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 23824788 - 23824661
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacat 226  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | |||||||| | ||| | |||||   |||||||||| ||    
T  23824788 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacacaccaagat 23824689  T
Q  227 tgtttacccagttcgatgcaaaatgacc 254  Q
    |||| |||||||||| ||||| ||||||    
T  23824688 tgttgacccagttcggtgcaatatgacc 23824661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 5017653 - 5017547
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| |||||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  5017653 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 5017555  T
Q  234 ccagttcg 241  Q
    ||||||||    
T  5017554 ccagttcg 5017547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 21801275 - 21801196
Alignment:
Q  390 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  21801275 aatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 31077203 - 31077146
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaaca 135  Q
    |||||||||||  ||||||| ||||||||||||| |||||||| ||||||||| ||||    
T  31077203 agatgtgtagagaaaaggaaatagtaatcaatgagtaaagtagcctcaagcaataaca 31077146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 469
Target Start/End: Original strand, 18232708 - 18233091
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 184  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||| |||||||||||||| |  ||||||| || |  ||||||||||||    
T  18232708 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacaaacctagatctaagtgtagagcaacaccacaagcataatcaaagc 18232806  T
Q  185 aacaaagataagc-aagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 283  Q
    || |||||||||| | ||| |  ||||   |||||||||| |||||| || ||  ||| | ||| |||||||| | ||| ||  |||||  | | ||||     
T  18232807 aataaagataagcgatgaaagagaggaacaaacacaccaagattgttgactcaaatcggtccaatatgacctaatctggggg--agagagcaaccctcca 18232904  T
Q  284 attcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccg 382  Q
    |||||||||||| | | || ||||||   |||||||||||| | | |||  ||| ||| ||||||||   |||||||||| ||||  |||  |||||||     
T  18232905 attcactatgatgaaagtgttacaaaagagttacaagaaatcagcttataagcttacacaagaacaagacctaatttctacccat--tttgtgtcaccca 18233002  T
Q  383 cactc---acaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||   | ||||||||| |||||||||||| ||||||||  |||| || |||||  |  ||| |||||||||||||||||||||||||    
T  18233003 cactctcaataatgaatcctaagagaaaacacaaaaggaag-cttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 4629865 - 4629929
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 199  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  4629865 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 4629929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 27165539 - 27165611
Alignment:
Q  65 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaa-gtagtctcaagcaacaacaa 136  Q
    ||||||| |||  |||||||| ||  ||||||||| |||||||||||  ||| ||||||||||||||||||||    
T  27165539 accaatataacaaagatgtgtggagcaaaggaagtcgtaatcaatgagcaaaagtagtctcaagcaacaacaa 27165611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 30519213 - 30519145
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 196  Q
    |||||||||||| |  ||||| ||||| |||||||||| || | ||||| | |||||||||||||||||    
T  30519213 caacaacaaacatatttagatttaagtgtgaagcaacaccataaacatatttaaagcaacaaagataag 30519145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 215 - 481
Target Start/End: Complemental strand, 102598 - 102334
Alignment:
Q  215 acacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgt 314  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||| | |||| ||  ||||| | ||||| ||| ||| ||||||||| ||||||||| | ||    
T  102598 acacaccaatattatttacccagttcgattcaaaattacctagtgtggaaga--gagaacaactctctgatccacaatgataagagtgatacaaagaggt 102501  T
Q  315 tacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaa 414  Q
    |||||||||||| | ||   ||||||||| ||||||  |||||||||| ||||| || ||||||| | |||||| ||| ||| | |||||||||||||||    
T  102500 tacaagaaattatcttaaaagctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcataataaattcgaagagaaaacactaa 102401  T
Q  415 aggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 481  Q
    |||| | ||||| || ||||||||||| | |||| |||  ||||||||||| |||||| || |||||    
T  102400 aggatgctttttgatccttcctctaataaaatcttacttaccaaggtgttttcaaatgttttccaac 102334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 505
Target Start/End: Complemental strand, 31513466 - 31513148
Alignment:
Q  178 tcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaa-tgacctactttggaggaaagagaatag 276  Q
    ||||||||||||||||||   |||| ||||| | |||||||||||| |||||||||| | ||| || ||||| ||||||| |||  ||||  || |||||    
T  31513466 tcaaagcaacaaagataaaagagaaaggaagaaaacaacacaccaatattgtttacctaattccatccaaaaatgacctatttt--agga--gataatag 31513371  T
Q  277 ctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagt 376  Q
     |||| ||| ||||||||||||||| ||  ||| | ||||||| |||||| | |||||    ||||||||||||  |||||||||| | ||| ||  |||    
T  31513370 ttctctgatccactatgataagaattatgaaaagaggttacaaaaaattagcttattc----acaaagaacaaac-ctaatttctacctatt-ttcgagt 31513277  T
Q  377 cacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttc 476  Q
    || || |||||||||||||||| ||||||||||||||||| |   |||||||| ||||||||||||| |||||||||  ||||||||||||||||| |||    
T  31513276 catccacactcacaatgaatcctaagagaaaacactaaag-atttttttttatccttcctctaatgaaatctcactattcaaggtgtttacaaatgtttc 31513178  T
Q  477 ccaacacaagaaa-aaactctcatcaaaga 505  Q
     |||| ||||||| ||||||||||| ||||    
T  31513177 tcaacccaagaaataaactctcatcgaaga 31513148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 469
Target Start/End: Complemental strand, 7493193 - 7493025
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 400  Q
    ||||||||| | |||| ||||||||||||||   ||||||| ||||||||  |||||||||| |  || || ||||||||| ||||| |||| ||||| |    
T  7493193 tgatacaaagaagttataagaaattaacataaaagctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactctcaataaatccta 7493094  T
Q  401 agagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    ||| |||||||||||||||| ||||| || ||||   |  ||| |||||||||||||||||||||||||    
T  7493093 agaaaaaacactaaaggaagctttttgatccttctaattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 469
Target Start/End: Complemental strand, 19752372 - 19752246
Alignment:
Q  342 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 441  Q
    |||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  | ||    
T  19752372 aagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatgat 19752274  T
Q  442 gagatctcactacccaaggtgtttacaa 469  Q
    || |||||||||||||||||||||||||    
T  19752273 gaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 487
Target Start/End: Original strand, 3051197 - 3051382
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 400  Q
    ||||||||||  |||||||||||||| ||||   ||||||||||||||||   ||||||||| ||||| || | |||||   ||||| |||||||||| |    
T  3051197 tgatacaaatgagttacaagaaattagcataagagctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactctcaatgaatccta 3051296  T
Q  401 agagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||| ||| |||||||| ||||| ||  ||||  |  ||| ||||||||||||||| ||||||| |||| |||||||| |||||    
T  3051297 agagaaagcacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaaga 3051382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 410
Target Start/End: Complemental strand, 9054942 - 9054748
Alignment:
Q  214 aacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatg 313  Q
    |||||||||| ||| ||||| | ||||  | ||| |||||||||| ||||||| |||| |  ||||||  || ||||| ||| | | |||||||||   |    
T  9054942 aacacaccaatattatttactctgttcagtccaatatgacctactctggaggagagagca--gctctctaatccactaagatgaaagtgatacaaagtgg 9054845  T
Q  314 ttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaaca 410  Q
    ||||||||||||| | ||   || ||||||||||||| ||||||||||| ||||| || ||||||| | ||||| |||||||||| |||||||||||    
T  9054844 ttacaagaaattagcttaaaagcgcacaaagaacaaaatctaatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 469
Target Start/End: Complemental strand, 5702730 - 5702332
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctca-agcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||| ||||| |||||||||||||||||| |||||  |||||||||||     |||||||||||||||||| |  |||| || || |     
T  5702730 agatgtgtggagcaaatgaagtggtaatcaatgaataaagt-gtctcctagcaacaacaacaaaaacagacctagatctaagtgtagagcatcaccacaa 5702632  T
Q  172 acataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
     |||||| ||||||| | |||||||| | ||||| |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||    
T  5702631 gcataattaaagcaatagagataagctatgaaggaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatatgggggagaga 5702532  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatta 369  Q
    | ||  | |||| || | ||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| |||| ||||  |||||||||| ||||      
T  5702531 gcat--ccctccaatcccctatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagagcaaaacctaatttctacccat-- 5702436  T
Q  370 tttaagtcacccgcactc---acaatgaatccaaagag-aaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
    ||| |||||||| |||||   | ||||||||| ||||| ||||||| |||||||| ||||| ||  ||||  |  ||| |||||||||||||||||||||    
T  5702435 tttgagtcacccacactctcaataatgaatcctaagagaaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgttt 5702336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 33503740 - 33503697
Alignment:
Q  422 ttttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33503740 ttttttattcttcctctaatgagatctcactacccaaggtgttt 33503697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 487
Target Start/End: Complemental strand, 4696781 - 4696443
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||| || |||||||| |  ||||||| || | ||||||||||||||| |||||||||||| ||| | || ||   |||||||||| |||||| ||    
T  4696781 aaacagacataaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataagcaatgaaagaaatgaacaaacacaccaagattgttgac 4696682  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||||| ||| |||||||| | ||| ||| |||| |  || |||| || |||||||||  ||| ||         |||||||||||||| | |||     
T  4696681 ccagttcgatccaatatgacctaatctgggggagagagca--gccctccaatccactatgat--gaaaga---------gttacaagaaattagcttata 4696595  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 432  Q
     ||| ||  ||||||||   |||||||||| ||||| | |  ||||||| ||||| || ||||||| |||||||||||| |||||||| ||||| ||  |    
T  4696594 agcttacgcaagaacaagacctaatttctacccattttgt--gtcacccacactctcattgaatcctaagagaaaacacaaaaggaagctttttgatctt 4696497  T
Q  433 tcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    |||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  4696496 tccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 4696443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 425
Target Start/End: Complemental strand, 8863732 - 8863521
Alignment:
Q  212 acaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataa-gaatgatacaaat 310  Q
    |||||||| ||| ||||||| ||||||||| | |||||| ||||||| ||  ||||| ||  || ||||  ||| |||||||| || || |||||||||     
T  8863732 acaacacatcaatattgttttcccagttcggttcaaaataacctactctgatggaaatag--taactctttgatccactatgagaaagagtgatacaaag 8863635  T
Q  311 atgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaa-tgaatccaaagagaaaac 409  Q
    | |||||||||||||||| ||   |||||||  |||||||   ||||||||| ||||| || ||||||| | ||| || || |||||| |||||||||||    
T  8863634 aggttacaagaaattaacttaaaagctcaca--gaacaaaccttaatttctacccatttttcaagtcactcacacacataaatgaatctaaagagaaaac 8863537  T
Q  410 actaaaggaagatttt 425  Q
    | ||||||||||||||    
T  8863536 attaaaggaagatttt 8863521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 469
Target Start/End: Complemental strand, 23799725 - 23799428
Alignment:
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
    ||||||||||||||| | |||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| ||||||||  |||    
T  23799725 acataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatttggagg--aga 23799628  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatta 369  Q
    ||  ||| |||| || ||||||||| | | || ||||||   |||||||||||||| | ||   ||| ||| ||||||||   |||||||||| ||||      
T  23799627 gagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccat-- 23799530  T
Q  370 tttaagtcacccgcactcaca--atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac 467  Q
    |||  ||||||| |  |||||  |||||||| ||| |||||||| |||||||| ||||| || |||||  |  ||| ||||| |||| ||||||||||||    
T  23799529 tttgtgtcacccactgtcacaatatgaatcctaagggaaaacacaaaaggaagctttttgatccttccaatggtgaaatctccctactcaaggtgtttac 23799430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 5990581 - 5990456
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 400  Q
    ||||||||| |||||||||||||||| | ||   ||||||||||||||    || ||||  | ||||| || ||||||||| ||||  |||||||||| |    
T  5990581 tgatacaaagatgttacaagaaattagcttaaaagctcacaaagaacacgacctcattttcacccatttttcaagtcacccacactttcaatgaatccta 5990482  T
Q  401 agagaaaacactaaaggaagattttt 426  Q
    |||||||||||||||| ||| |||||    
T  5990481 agagaaaacactaaagaaagcttttt 5990456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Original strand, 28307711 - 28307807
Alignment:
Q  373 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    ||||||||| ||||| || ||||||| || ||||||||| |||| ||| |||||||| |||||  |  ||| |||||||||||||||||||| ||||    
T  28307711 aagtcacccacactctcactgaatcctaaaagaaaacacaaaagaaagcttttttatccttccaattgtgaaatctcactacccaaggtgttaacaa 28307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 11771855 - 11771921
Alignment:
Q  129 aacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 195  Q
    ||||||||||| ||||||||||||||||||||||||| || |  |||||  ||| ||||||||||||    
T  11771855 aacaacaaacatacctagatctaagtatgaagcaacaccaaaagcataacaaaaacaacaaagataa 11771921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 26403159 - 26403081
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||  |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  26403159 atgaatcataagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 5990793 - 5990748
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 136  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||    
T  5990793 aaaggaagtagtaatcaatggataaagtagcatcaagcaacaacaa 5990748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 9055082 - 9055025
Alignment:
Q  79 gatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 136  Q
    ||||||| || ||||||||||| ||||||||| |||||||||||||||  ||||||||    
T  9055082 gatgtgtggagtaaaggaagtactaatcaatggataaagtagtctcaaaaaacaacaa 9055025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 7493328 - 7493264
Alignment:
Q  65 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca 129  Q
    ||||||| ||||  ||||||| ||  ||||||||||||||||||||  |||||||||||||||||    
T  7493328 accaataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaagca 7493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 466
Target Start/End: Original strand, 14601233 - 14601405
Alignment:
Q  294 ataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatg 393  Q
    |||| ||||||||||| | |||||| ||||||| | |||  || ||||||||||  || ||||||| || | ||| || ||||||| |  || ||| |||    
T  14601233 ataataatgatacaaagaggttacacgaaattagcgtataagcccacaaagaacgtatcctaatttttacctatttttcaagtcactcaaacgcacgatg 14601332  T
Q  394 aatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 466  Q
    ||||| | ||||||||| ||||| ||| ||||  ||| || ||||||| |||||||| || |||| |||||||    
T  14601333 aatcctatgagaaaacaataaagaaagcttttagattatttctctaataagatctcattagccaatgtgttta 14601405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 8863920 - 8863833
Alignment:
Q  42 tgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca 129  Q
    ||||||||| ||| |||||| | ||||||| |||||| ||||||  |  |||||||||  |||| ||||||||||||||| |||||||    
T  8863920 tgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtgaaacaaaggaagtgctaattaatgaataaagtagtttcaagca 8863833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 32916304 - 32916355
Alignment:
Q  114 aaagtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaaca 165  Q
    |||||||||||||||||||||||| | || ||||| |||||||||| |||||    
T  32916304 aaagtagtctcaagcaacaacaaataaacttagatataagtatgaaccaaca 32916355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 295
Target Start/End: Complemental strand, 26403415 - 26403256
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| |||    ||||   |||||||||| |||||| ||    
T  26403415 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaaacgaggaacaaacacaccaagattgttgac 26403316  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgat 295  Q
    |||||||| | ||| |||||||| | ||| ||  |||||  |||||||| || |||||||||    
T  26403315 ccagttcggtccaatatgacctaatctggggg--agagagcagctctccaatccactatgat 26403256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 28387895 - 28387955
Alignment:
Q  136 aacagacctagatctaagtatgaagcaacatcagaca--cataatcaaagcaacaaagataa 195  Q
    ||||||||||||||||||| |||||||| |||| |||  |||||| ||||||||||||||||    
T  28387895 aacagacctagatctaagtgtgaagcaaaatca-acaagcataatgaaagcaacaaagataa 28387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 34477417 - 34477335
Alignment:
Q  121 tctcaagcaacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaag 203  Q
    ||||||||||||||||| ||| |||||| ||||  |||| |||||  | | ||||| ||||||||| ||||||||| ||||||    
T  34477417 tctcaagcaacaacaaagagatctagatttaagggtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaag 34477335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 469
Target Start/End: Original strand, 6127224 - 6127468
Alignment:
Q  225 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 324  Q
    |||||| || ||||||| | ||| |||||||| ||||| |  ||||||  |||||||| || ||||||||| | | || ||||||   ||||||||||||    
T  6127224 attgttgactcagttcggtccaatatgacctaatttgggg--aagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 6127321  T
Q  325 taacatattcgctcac-aaagaacaaattctaatttctatccattatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaag 420  Q
    || | |||  ||| || |||||||||   |||||||||| ||||  |||  ||||||| |||||   | ||||||||| |||||||||||| |||| |||    
T  6127322 tagcttataagcttacaaaagaacaagacctaatttctacccat--tttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaagaaag 6127419  T
Q  421 attttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
     ||||| || |||||  |  ||| ||||||||||||||  |||||||||    
T  6127420 ctttttgatccttccaatggtgaaatctcactacccaaaatgtttacaa 6127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 28307421 - 28307469
Alignment:
Q  88 attaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 136  Q
    |||||||||||||||||||||||| | |||||| |||||| ||| ||||    
T  28307421 attaaaggaagtagtaatcaatgagtcaagtagcctcaagtaacgacaa 28307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 34477239 - 34477128
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 400  Q
    ||||||||| | |||| ||||||||||| ||    ||||||||||||||   |||||||| | ||||| || ||||||| |  |  ||||||||||||||    
T  34477239 tgatacaaagaggttaaaagaaattaacttacaaactcacaaagaacaa---ctaatttcgacccatttttcaagtcactcaaatccacaatgaatccaa 34477143  T
Q  401 agagaaaacactaaa 415  Q
    |||||||||| ||||    
T  34477142 agagaaaacaataaa 34477128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 95 - 480
Target Start/End: Original strand, 5611009 - 5611398
Alignment:
Q  95 gaagtagtaatcaatgaataaagtagtctcaagcaacaa------caaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 188  Q
    ||||||||||||||||| ||||||||||| |||||||||      |||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  5611009 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 5611108  T
Q  189 aagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattca 288  Q
    |||||||| ||||||||||| | |||||||||||| |||||||| | | ||||   |||||| || |||| ||||||||   ||  | || || ||| ||    
T  5611109 aagataagaaagaagggaagaaaacaacacaccaatattgtttatcaaattcggcccaaaataacatactatggaggaa--tgaccaactttctgatcca 5611206  T
Q  289 ctatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca 388  Q
    ||||||||| | ||||||||| |  ||| || |||||| | ||   | |||||||||||||| ||| ||||||||||||| |||||||||    ||||||    
T  5611207 ctatgataaaactgatacaaagagattaaaaaaaattagcttaaaagttcacaaagaacaaaatcttatttctatccatt-tttaagtcataaacactca 5611305  T
Q  389 -caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaa 480  Q
      ||||| ||| ||||||||||||||||| ||| ||||| ||  || |  |||||| |||||| || | ||||||||||| |||| |||||||    
T  5611306 taaatgattcctaagagaaaacactaaagcaagctttttgatcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 5611398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 275 - 472
Target Start/End: Original strand, 30899918 - 30900114
Alignment:
Q  275 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 374  Q
    |||||||||||  | ||||| |||| ||||||||| | |||||||||||||| | ||   |||||||||||||||| |||| ||||||   ||| || ||    
T  30899918 agctctccgatctattatgagaagagtgatacaaagaggttacaagaaattagcctacaagctcacaaagaacaaactctattttctactgatttttcaa 30900017  T
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 472  Q
    | ||| |  || ||||| |||||| | ||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  30900018 gccactcaaacccacaaagaatccta-gagaaaacactaaagaaagcttttttatccttcctctaatgaaatctcactacccaaggtgtttataaatg 30900114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 341 - 487
Target Start/End: Original strand, 28832374 - 28832519
Alignment:
Q  341 aaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 440  Q
    ||||||||| |||||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  |      
T  28832374 aaagaacaagttctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatgg 28832473  T
Q  441 tgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  28832474 tgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 28832519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 338 - 426
Target Start/End: Original strand, 2630345 - 2630433
Alignment:
Q  338 cacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 426  Q
    |||||||||||||  ||||||| ||| |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  2630345 cacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactcacaatgaatcctaagagaaaacactaaaggaagcttttt 2630433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 487
Target Start/End: Complemental strand, 11181852 - 11181667
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatcca 399  Q
    ||||||||||  |||||||||||||| | ||   |||| |||| ||||||   |||||||||| ||||| || | ||||||| ||||||||||||||||     
T  11181852 tgatacaaatgagttacaagaaattagcctaaaagctctcaaatgaacaagacctaatttctacccatt-ttcatgtcacccacactcacaatgaatcct 11181754  T
Q  400 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    |||||||||||| |||||||| ||||| || |||||  |  ||| || |||||||||||||||||||| |||| |||||||| |||||    
T  11181753 aagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttcactacccaaggtgtttac-aatgtttcccaacccaaga 11181667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 465
Target Start/End: Complemental strand, 42127656 - 42127266
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 172  Q
    |||||||| ||  |||| |||| |||||||||| ||||||| ||||| ||||||||||||    |||||| || |||||| | |  ||||||| || |      
T  42127656 agatgtgtggagcaaagaaagtggtaatcaatggataaagt-gtctccaagcaacaacaacaaaacagacttaaatctaattgtagagcaacaccacaag 42127558  T
Q  173 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 271  Q
    |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| |||||| ||||||||||||  || |||||||| | ||| ||| ||||    
T  42127557 cataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcgatctaatatgacctaatctgggggagagag 42127458  T
Q  272 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattat 370  Q
     |  || | || || ||||| ||| | | || |||||  | |||||||||||||| | |||  ||| ||||| |||||| | ||| |||||| ||||| |    
T  42127457 ca--gccccccaatccactaagatgaaagtgttacaatga-gttacaagaaattagcttataagcttacaaaagaacaagtcctactttctacccatttt 42127361  T
Q  371 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
    | |  |||||| ||||| |||||||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||    
T  42127360 tcatatcacccacactctcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 465
Target Start/End: Original strand, 34842449 - 34842843
Alignment:
Q  73 aacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa------acagacctagatctaagtatgaagcaacat 166  Q
    ||||||||||||| || ||||||||||||||||||| || |||||||| |||||||| ||||||      ||| |||||||||||||| ||||||||||     
T  34842449 aacttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaataaacaaacctagatctaagtgtgaagcaacac 34842547  T
Q  167 cagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacatt-gtttacccagttcgatgcaaaatgacctactttggagg 265  Q
    || |  ||||  | |||||||||||||||| |||| ||||  || ||||  |||| | ||| |||||||||||| |    ||  |  ||||| || ||||    
T  34842548 cacaagcatatccgaagcaacaaagataagaaagatggga--gaaacaatccaccgaaatttgtttacccagtttggataaatttatcctacatttgagg 34842645  T
Q  266 aaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatcc 365  Q
     | ||||  |||||||  || |||||||  | || ||||||||| | |||||||||  ||| | ||   |||||| ||||||| || ||||||||||  |    
T  34842646 ga-gagagcagctctctaatccactatgtaatgagtgatacaaagaggttacaagatgttatcttacaagctcaccaagaacatatcctaatttctactc 34842744  T
Q  366 attatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
    ||| || |||||||    || |||||||||| | ||||||| ||||||||| || | ||| ||  ||||| |||||||||||||||||||||||||||||    
T  34842745 atttttcaagtcactaaaacccacaatgaattctaagagaacacactaaagaaa-actttgtaaccttcccctaatgagatctcactacccaaggtgttt 34842843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 91 - 469
Target Start/End: Complemental strand, 17004193 - 17003811
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 184  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| | |||||||| || |  ||||||||||||    
T  17004193 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgt-aagcaacaccacaagcataatcaaagc 17004096  T
Q  185 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 283  Q
    || |||||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||  |||||  |||||| |     
T  17004095 aaaaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatctggggg--agagagcagctcttca 17003998  T
Q  284 attcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatt--atttaagtcacc 380  Q
    || ||||||||| | | |  | ||||   ||||||| |||||||| ||   ||| ||| ||||||||   |||||||||| |||||  |||| | ||||     
T  17003997 atccactatgatgaaagtatttcaaaagagttacaaaaaattaacttacaagcttacacaagaacaagacctaatttctacccatttaatttcactcact 17003898  T
Q  381 cgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    | ||  ||  |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  17003897 ctca--caatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 469
Target Start/End: Complemental strand, 31300574 - 31300447
Alignment:
Q  342 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 441  Q
    |||||||| | |||||||||| |||||  | |  |||||| ||||| |||||||||| |||||||||||| ||||||||  |||| || |||||  |  |    
T  31300574 aagaacaagtcctaatttctacccatttctcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatggt 31300475  T
Q  442 gagatctcactacccaaggtgtttacaa 469  Q
    || |||||||||||||||||||||||||    
T  31300474 gaaatctcactacccaaggtgtttacaa 31300447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 3880166 - 3880307
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaaa--cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 187  Q
    ||||||||| |||||||||  ||||||| |||| ||| ||||||||||  |||||||| |||||||| | |||||||| || |  ||||||||||||||     
T  3880166 aaaggaagtggtaatcaatagataaagt-gtcttcaatcaacaacaaaaacagacctaaatctaagtgtaaagcaacaccacaagcataatcaaagcaat 3880264  T
Q  188 aaagataagcaa-gaagggaaggagacaacacaccaacattgtt 230  Q
    |||||||||||| ||| | ||||| |||||||||||| ||||||    
T  3880265 aaagataagcaatgaaagaaagga-acaacacaccaagattgtt 3880307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 487
Target Start/End: Original strand, 19588896 - 19589007
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 474  Q
    ||||||| || || |||||||||| |||||||||||| |||||||||||||| || |||||  |  ||| |||||||| |||||| ||||||| |||| |    
T  19588896 gtcacccacaatctcaatgaatcctaagagaaaacacaaaaggaagatttttgatccttccaatggtgaaatctcactgcccaagatgtttac-aatgtt 19588994  T
Q  475 tcccaacacaaga 487  Q
    ||||||| |||||    
T  19588995 tcccaacccaaga 19589007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 353 - 487
Target Start/End: Complemental strand, 24553495 - 24553362
Alignment:
Q  353 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 452  Q
    |||||||||| ||||| ||||  | |||| |||||  ||||||| | |||||||||||| |||||||| ||||| || ||||   |  ||| ||||||||    
T  24553495 ctaatttctacccattttttatatgacccacactcttaatgaattctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctcact 24553396  T
Q  453 acccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||||||||| |||| |||||||| |||||    
T  24553395 acccaaggtgtttac-aatgtttcccaacccaaga 24553362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 2630087 - 2630132
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 136  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  2630087 aaaggaagtagtaagcaatgaataaagtagcctcaagcaacaacaa 2630132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 469
Target Start/End: Original strand, 10281901 - 10281997
Alignment:
Q  375 gtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    ||||||| ||||||||||  |||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  10281901 gtcacccacactcacaatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 411
Target Start/End: Original strand, 6741964 - 6742039
Alignment:
Q  336 ctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 411  Q
    |||||||||||||||  ||||||||||  |||| || ||||||||| ||||| |||||||||| |||| |||||||    
T  6741964 ctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactctcaatgaatcctaagaaaaaacac 6742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 28537489 - 28537527
Alignment:
Q  98 gtagtaatcaatgaataaagtagtctcaagcaacaacaa 136  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaa 28537527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 30899668 - 30899765
Alignment:
Q  39 tgttgtgaattcaaactaataata-ataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 136  Q
    |||||||||||||||| ||||| | ||| ||||| ||||||||||||| ||   || ||| |||||||||||||  ||||||| |||||||||||||||    
T  30899668 tgttgtgaattcaaac-aataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaa 30899765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 33030948 - 33030854
Alignment:
Q  313 gttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaa 407  Q
    |||||||||||||| | ||   ||||||||||||||||   ||||||||| ||||| || ||||||| | ||||| |||||||||| ||||||||    
T  33030948 gttacaagaaattagcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 487
Target Start/End: Complemental strand, 11916901 - 11916807
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  11916901 atgaaccctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 11916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 24553691 - 24553569
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| |     
T  24553691 aaacagacctaaatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgat 24553592  T
Q  234 ccagttcgatgcaaaatgaccta 256  Q
    |||||||| | ||| ||||||||    
T  24553591 ccagttcggtccaatatgaccta 24553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 12084361 - 12084298
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 199  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  12084361 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaa 12084298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 95 - 480
Target Start/End: Original strand, 21156296 - 21156685
Alignment:
Q  95 gaagtagtaatcaatgaataaagtagtctcaagcaacaa------caaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 188  Q
    ||||||||||||||||| ||||||||||| |||||||||      |||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  21156296 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 21156395  T
Q  189 aagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattca 288  Q
    |||||||| ||||||||||| | |||||||||||| |||||||| | | ||||   |||||| || |||| ||||||||   ||  | || || ||| ||    
T  21156396 aagataagaaagaagggaagaaaacaacacaccaatattgtttatcaaattcggcccaaaataacatactatggaggaa--tgaccaactttctgatcca 21156493  T
Q  289 ctatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca 388  Q
    ||||||||| | ||||||||| |  ||| || |||||| | ||   | |||||||||||||| ||| ||||||||||||| |||||||||    ||||||    
T  21156494 ctatgataaaactgatacaaagagattaaaaaaaattagcttaaaagttcacaaagaacaaaatcttatttctatccatt-tttaagtcataaacactca 21156592  T
Q  389 -caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaa 480  Q
      ||||| ||| ||||||||||||||||| ||| ||||| ||  || |  |||||| |||||| || | ||||||||||| |||| |||||||    
T  21156593 taaatgattcctaagagaaaacactaaagcaagctttttgatcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 21156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 135 - 469
Target Start/End: Complemental strand, 18553058 - 18552726
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||| ||| |||||||| |  ||||||| || | ||||||||||||||| |||||||| ||| ||| | |||||   || ||||||| |||||| ||    
T  18553058 aaacagaactaaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataatcaatgaaagaaaggaacaaatacaccaagattgttgac 18552959  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | | || ||||||   |||||||||||||| | |||     
T  18552958 ccagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttata 18552861  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 432  Q
     ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||    
T  18552860 agcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagttttttgatcct 18552763  T
Q  433 tcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||  |  ||| |||||||||||||||||||||||||    
T  18552762 tccaatggtgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 78 - 487
Target Start/End: Complemental strand, 40593020 - 40592606
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| |||||||||| ||||| | ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  40593020 agatgtgtggagcaaaggaagtggtaatcaatggataaaat-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 40592922  T
Q  172 acataatcaaagcaacaaagataagcaag--aagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaag 269  Q
     |||||||||||||| | ||||||||||   |||  |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||  ||| ||    
T  40592921 gcataatcaaagcaatatagataagcaatgaaagaaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatctgtgggagag 40592822  T
Q  270 agaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatt 368  Q
    ||||  ||||||| ||  |||||||| | | || ||||||   |||||||||||||| | ||   ||| ||| ||||||||| ||||||||||| |||||    
T  40592821 agaa--gctctccaatcgactatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaaaatctaatttctacccatt 40592724  T
Q  369 atttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 466  Q
     | |  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||    
T  40592723 ttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgttta 40592626  T
Q  467 caaatggttcccaacacaaga 487  Q
    | |||| |||||||| |||||    
T  40592625 c-aatgtttcccaacccaaga 40592606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 531
Target Start/End: Original strand, 29100033 - 29100472
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa---acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 187  Q
    ||||||||||||||||||||| || | |||||||||||||||||||   || ||  ||||||||| | ||||| |||| || | ||||| |||||||||     
T  29100033 aaaggaagtagtaatcaatgagtagaatagtctcaagcaacaacaacaaactgagatagatctaactgtgaagaaacaccacaaacatattcaaagcaag 29100132  T
Q  188 aaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattc 287  Q
    |||||  || |||||         |||||||||||| ||||||||||||||||| | |||||| ||| ||| |  ||| ||||||  ||||||||  | |    
T  29100133 aaagaagagaaagaaa--------acaacacaccaatattgtttacccagttcggtccaaaattacccactat--agggaagagagcagctctccattcc 29100222  T
Q  288 actatgat-aagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcact 386  Q
    |||||||| |||| ||||||||| | |||| ||||||||| | ||    |||||||||||||||  ||||||||||  | || || ||||||||  ||||    
T  29100223 actatgataaagagtgatacaaagaggttataagaaattagcttaaaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacact 29100322  T
Q  387 ca-caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac--aaatggttcccaacac 483  Q
    ||  ||||||||  |||||| || ||||||||||  |||||||| ||||   ||||   ||||||| |||| | ||||| ||  ||||| ||||||||      
T  29100323 cataaatgaatcataagagataatactaaaggaaacttttttatccttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacct 29100422  T
Q  484 aagaaa-aaactctcatcaaagatgcccaaccctaaa-ttccctcctttg 531  Q
    |||||| ||||||||| ||||||  | |||||||||| ||||||||||||    
T  29100423 aagaaataaactctcaccaaagacactcaaccctaaacttccctcctttg 29100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 458
Target Start/End: Complemental strand, 44658536 - 44658345
Alignment:
Q  268 agagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccat 367  Q
    ||||||||  |||| ||| ||||| ||||||| ||||||||| ||||||||| |||||| |  | |  ||||||||||| | |||||||||||||||  |    
T  44658536 agagaataattctcagatccactaggataagagtgatacaaaaatgttacaataaattagctcactaactcacaaagaagatattctaatttctatctgt 44658437  T
Q  368 tatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttt-attcttcctctaatgagatctcactacccaa 458  Q
      || ||||||| |  || |||||| ||||| ||||||||| | ||||| |||||||||| || ||| ||||||||||||||||| ||||||    
T  44658436 atttcaagtcactcaaacccacaattaatcccaagagaaaataataaagaaagatttttttatcctttctctaatgagatctcaccacccaa 44658345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 469
Target Start/End: Complemental strand, 3328355 - 3328198
Alignment:
Q  313 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 411  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||||| ||||| ||||| |||| ||||||||||||    
T  3328355 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgtatcctaagagaaaacac 3328256  T
Q  412 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
     |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  3328255 aaaaggaagttttttgatccttccaatgctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 354 - 490
Target Start/End: Original strand, 8126761 - 8126895
Alignment:
Q  354 taatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcacta 453  Q
    ||||||||| ||||| |||  ||||||| ||||| |||||||||  |||||||||||| ||| |||| ||||| || |||||  | |||| |||||||||    
T  8126761 taatttctacccatt-tttgtgtcacccacactctcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatgatgaaatctcacta 8126859  T
Q  454 cccaaggtgtttacaaatggttcccaacacaagaaaa 490  Q
    |||||||||||||| |||| |||||||| ||||||||    
T  8126860 cccaaggtgtttac-aatgtttcccaacccaagaaaa 8126895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 395
Target Start/End: Original strand, 25516791 - 25517153
Alignment:
Q  39 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa-- 136  Q
    |||||||||||  ||||  |||| ||||||||| | |||   ||||| || ||||| |||||||||||||| | ||||||||||||||  ||||||||      
T  25516791 tgttgtgaatttgaactggtaatcataccaataaatctttattgtgttgagtaaagaaagtagtaatcaataagtaaagtagtctcaaataacaacaaca 25516890  T
Q  137 ----acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggaga-caacacaccaacattgttt 231  Q
        | |||| |||||| |||| |||| ||||| || | ||||| | |||| ||||| |||||| |||||| || ||| | ||||||||||| | |||||    
T  25516891 aaaaatagacttagatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaaggataagaaagaagagagggaaaacaacacaccaatagtgttt 25516990  T
Q  232 acccagttcgat-gcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacat 330  Q
    ||||||||||||   ||||||| | ||||||   || |||||| | |||||  ||| | | |||||||||||||| |  || |||| ||||||||| | |    
T  25516991 acccagttcgatctaaaaatgatcaactttg--agagagagaacaactctctaatttattgtgataagaatgataaatttaggttataagaaattagctt 25517088  T
Q  331 attcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaa 395  Q
    |   ||||||||||||||||  ||||||||||   ||| || ||||||||| |||||||| ||||    
T  25517089 aaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacactcacagtgaa 25517153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 469
Target Start/End: Complemental strand, 1736442 - 1736145
Alignment:
Q  173 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 271  Q
    |||||||||||||| ||| |||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| ||||    
T  1736442 cataatcaaagcaataaacataagcaatgaaagaaaggaacaaacacaccaatattgttgacccagttcggtccaatatgacctaatctgggggagagag 1736343  T
Q  272 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattat 370  Q
     |  || |||| || ||||||||| | | || ||||||   |||||||||||||||| |||  ||| ||| ||||||||   |||||||||| ||||| |    
T  1736342 ca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattaacttataagcttacacaagaacaagacctaatttctacccatttt 1736245  T
Q  371 ttaagtcacccgcactcacaat---gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac 467  Q
     |  ||||||  ||||| ||||   |||||| |||||||||||| ||| |||| ||||| || |||||  |  ||| |||||||||||||||||||||||    
T  1736244 gt--gtcaccaacactctcaataatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac 1736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 313 - 487
Target Start/End: Complemental strand, 3323689 - 3323515
Alignment:
Q  313 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 411  Q
    |||||||||||||| | |||  ||| ||||| |||||| |  ||||||||| ||||| || |  |||||| ||||| |||||||| | ||||||||||||    
T  3323689 gttacaagaaattagcttataagcttacaaaagaacaagtcataatttctacccattgttcatatcacccacactctcaatgaattctaagagaaaacac 3323590  T
Q  412 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
     |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  3323589 aaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 3323515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 287 - 519
Target Start/End: Complemental strand, 5366348 - 5366113
Alignment:
Q  287 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcact 386  Q
    ||||||||| | | ||||||||| | |||||||||||||| | ||    ||||||| ||| ||||  ||||||||| || || ||  |||||||| ||||    
T  5366348 cactatgatgaaagtgatacaaagaggttacaagaaattatcttaaaatctcacaatgaaaaaatcttaatttctacccttttttctagtcacccacact 5366249  T
Q  387 cacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat-gagatctcactacccaaggtgtttacaaatggttcccaacaca 484  Q
     | || ||||||| ||| ||||||||||||||||  ||||  || |||||  | || || |||| ||||||||||||||||||||||| || ||||| ||    
T  5366248 aataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttccaattattgaaatcttactacccaaggtgtttacaaatgttttccaactca 5366149  T
Q  485 agaaa-aaactctcatcaaagatgcccaaccctaaa 519  Q
    ||||| ||||||||| ||||||  | ||||||||||    
T  5366148 agaaataaactctcaccaaagactctcaaccctaaa 5366113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 469
Target Start/End: Original strand, 48438126 - 48438461
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||| ||| |||||||| ||| ||  | |||||   |||||||||| ||| || ||    
T  48438126 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataaacaatgacagaaaggaacaaacacaccaagattattgac 48438225  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    | |||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | | || ||||||   |||||||||||||| |||||     
T  48438226 ctagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcatata 48438323  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat---gaatccaaagagaaaacactaaaggaagattttttat 429  Q
     ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| ||||   |||||| |||||||||||| |||||||| ||||| ||    
T  48438324 agcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaagctttttgat 48438421  T
Q  430 tcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
      ||||  |  ||| |||||||||||||||||||||||||    
T  48438422 cattccaatggtgaaatctcactacccaaggtgtttacaa 48438461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 25795931 - 25796024
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttaca 468  Q
    ||||||| ||||| |||||||||| |||||||||||  |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||||    
T  25795931 gtcacccacactctcaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttaca 25796024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 487
Target Start/End: Complemental strand, 8370724 - 8370313
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| || |||||||||  ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  8370724 agatgtgtggagtaaaggaagaggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaa 8370626  T
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacacc--aacattgtttacccagttcgatgcaaaatgacctactttggaggaaa 268  Q
     |||||||||||| |||||||||||||| ||| | |||||   ||||||||  || |||||| |||||||||| | ||| |||||||| | ||| ||  |    
T  8370625 gcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctggggg--a 8370529  T
Q  269 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccat 367  Q
    ||||  |||||||| || ||||||||| | | || |||||| | |||||||||||||| | ||   ||| ||| ||||||||    ||||||||| ||      
T  8370528 gagagcagctctccaatccactatgatgaaagtgttacaaaga-gttacaagaaattagcttaaaagcttacacaagaacaagacataatttctaccc-- 8370432  T
Q  368 tatttaagtcacccgcactcaca--atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
     ||||  ||||||| | ||||||  |||||||| |||||||||||| ||||||| | |||| || |||||  |  ||| ||||||||||||||| |||||    
T  8370431 -atttgtgtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaa-acttttgatccttccaatggtgaaatctcactacccaagatgttt 8370334  T
Q  466 acaaatggttcccaacacaaga 487  Q
    || |||| |||||||| |||||    
T  8370333 ac-aatgtttcccaacccaaga 8370313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 21353639 - 21353757
Alignment:
Q  301 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 400  Q
    ||||||||||  |||||||||||||| || |   |||||||||||||| |  |||||||||| ||||| || | | ||| | |||| ||||||||||  |    
T  21353639 tgatacaaatgagttacaagaaattagcacaagagctcacaaagaacacaacctaatttctacccatttttcatgccactcacacttacaatgaatctta 21353738  T
Q  401 agagaaaacactaaaggaa 419  Q
    |||||||||||||||||||    
T  21353739 agagaaaacactaaaggaa 21353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 469
Target Start/End: Complemental strand, 30710028 - 30709630
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  30710028 agatgtgtggagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtttagagcaacaccataa 30709930  T
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacacc--aacattgtttacccagttcgatgcaaaatgacctactttggaggaaa 268  Q
     |||||||||||| |||||||||||||| ||| | |||||   ||||||||  || |||||| |||||||||| | ||| |||||||| | ||| ||  |    
T  30709929 gcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctggggg--a 30709833  T
Q  269 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccat 367  Q
    ||||  ||| |||| || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| |||| |||   |||||||||| ||||    
T  30709832 gagagcagccctccaatccactatgatgaaattgttacaaaagagttacaagaaattagcttataagcttacacaagagcaagacctaatttctacccat 30709733  T
Q  368 tatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtt 464  Q
       ||  ||||||| |||||   | ||||||||| |||||||||||| |||||||| | ||| ||  ||||  | |||| |||||||| |||||||||||    
T  30709732 --cttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaagctatttgatcattccaatgatgaaatctcactccccaaggtgtt 30709635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 487
Target Start/End: Complemental strand, 47923824 - 47923728
Alignment:
Q  390 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||||||| | |||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  47923824 aatgaatcctacgagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47923728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 24695101 - 24694990
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 474  Q
    ||||||| ||||| |||||||||| || ||||||||| |||||||| ||||| ||  ||||  |  ||| ||||||| ||||||||||||||| |||| |    
T  24695101 gtcacccacactctcaatgaatcctaaaagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcaccacccaaggtgtttac-aatgtt 24695003  T
Q  475 tcccaacacaaga 487  Q
    ||||||| |||||    
T  24695002 tcccaacccaaga 24694990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 47924106 - 47924028
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa--cagacctagatctaagt 154  Q
    |||||||| || |||||||||| |||||||||| ||||||| ||||| |||||||||||||  |||||||||||||||||    
T  47924106 agatgtgtggagtaaaggaagtggtaatcaatggataaagt-gtctccaagcaacaacaaaaacagacctagatctaagt 47924028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 487
Target Start/End: Complemental strand, 1417460 - 1417315
Alignment:
Q  341 aaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 440  Q
    ||||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||| ||  ||||| || ||| |  |      
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactcccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatgg 1417361  T
Q  441 tgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||| ||||||||||| || |||||||| |||| |||||||| |||||    
T  1417360 tgaaatctcactacctaaagtgtttac-aatgtttcccaacccaaga 1417315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 3715921 - 3715843
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  3715921 atgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 387
Target Start/End: Complemental strand, 4387065 - 4386851
Alignment:
Q  173 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
    |||||||||| ||| |||||||||||| ||| | |||||   |||||| |||  |||||||||||||||   | ||  |||||||||| ||| ||| |||    
T  4387065 cataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacatcaaagattgtttacccagtttagttcagtatgacctactctgggggagaga 4386966  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 370  Q
    | |  ||||||| || || || ||||| | ||||||||||  |||||||||||||| | ||   ||||||||||||||||  ||||||||||  |||| |    
T  4386965 gca--gctctccaatccaataagataaaagtgatacaaatgggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttctactcatttt 4386868  T
Q  371 ttaagtcacccgcactc 387  Q
    | ||||||||| |||||    
T  4386867 tcaagtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 487
Target Start/End: Original strand, 26298900 - 26299250
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| |  ||||   |||||||||| |||||| ||    
T  26298900 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaacgaaagagaggaacaaacacaccaagattgttgac 26298999  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| ||||| || | ||| ||| |||| |  || |||| ||  |||||||| | | || ||||||   |||||||||||||| | |||     
T  26299000 ccagttcggttcaatatgacataatctgggggagagagca--gccctccaatctactatgatgaaagtgttacaaaagagttacaagaaattagcttata 26299097  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaa-ggaagattttttattc 431  Q
      || | | ||||||||   |||||||||| ||||| | |  ||||||| || || |||| ||||| |||||||||||| ||| ||||| ||||| ||      
T  26299098 aacttagacaagaacaagacctaatttctacccattttgt--gtcacccacaatctcaattaatcctaagagaaaacacaaaaaggaagctttttgataa 26299195  T
Q  432 ttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  26299196 ttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 26299250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 34482106 - 34482174
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 196  Q
    |||||||||||||||||||||| |||| ||||| |||| ||   |||||| ||||||||| ||||||||    
T  34482106 caacaacaaacagacctagatcaaagtgtgaagtaacaccacgtacataaccaaagcaaccaagataag 34482174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 40844801 - 40844861
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcc 435  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||    
T  40844801 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttcc 40844861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 462
Target Start/End: Original strand, 10274589 - 10274620
Alignment:
Q  431 cttcctctaatgagatctcactacccaaggtg 462  Q
    ||||||||||||||||||||||||||||||||    
T  10274589 cttcctctaatgagatctcactacccaaggtg 10274620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 469
Target Start/End: Original strand, 47649737 - 47649815
Alignment:
Q  391 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| |||| ||||||||||||||||||||    
T  47649737 atgaatcctaagagaaaacacaaaaggaagctttttgatccttcaaatggtgaaatctaactacccaaggtgtttacaa 47649815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 469
Target Start/End: Complemental strand, 25929332 - 25929237
Alignment:
Q  375 gtcacccgcactcacaatgaatccaaagagaaaacac--taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    ||||||| |||||||||||||||| ||||||||||||   ||| |||| ||||| || |||||  |  ||| |||||||||||||| ||||||||||    
T  25929332 gtcacccacactcacaatgaatcctaagagaaaacacaaaaaaagaagctttttgatccttccgatggtgaaatctcactacccaa-gtgtttacaa 25929237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 25929617 - 25929556
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 196  Q
    ||||| ||||| |||||||| |  ||||||| || | |||||||||||||||||||||||||    
T  25929617 aaacaaacctaaatctaagtgtagagcaacaccacaaacataatcaaagcaacaaagataag 25929556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 8126613 - 8126677
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 199  Q
    ||||| ||||| |||||||| |  ||||||| || || |||||||||||||| ||||||||||||    
T  8126613 aaacatacctaaatctaagtgtagagcaacaccacactcataatcaaagcaataaagataagcaa 8126677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 21711173 - 21711257
Alignment:
Q  173 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 256  Q
    |||||||||||||| | |||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  21711173 cataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 21711257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 27026857 - 27026920
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 199  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  27026857 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaa 27026920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 91 - 505
Target Start/End: Original strand, 14548 - 14964
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctcaagcaaca-----acaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagca 185  Q
    |||||||||  |||||||| |  |||||||||||||||||||     ||||||| ||||| |||||||||||||| |||| |  |  |||  |||||| |    
T  14548 aaaggaagtgttaatcaattagcaaagtagtctcaagcaacacaacaacaaacatacctatatctaagtatgaagaaacacctcaagcatgttcaaagaa 14647  T
Q  186 acaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgat 285  Q
    ||||||||||  |||||| ||| || | |||||||||| |||||||||| | || | | ||||||||| |||| |||  || |||||  | | |||||||    
T  14648 acaaagataaa-aagaagagaaagaaaaaacacaccaatattgtttacctaatttggtccaaaatgacatactatgg--gagagagagcaac-ctccgat 14743  T
Q  286 tcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcac 385  Q
      | |||||||||| ||||||||| | ||||| |||||||| | ||   ||||||||||||| ||  ||| || ||| | ||| || ||||||||| |||    
T  14744 caattatgataagagtgatacaaagaggttacgagaaattagcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacac 14843  T
Q  386 tcacaa--tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacac 483  Q
    ||||||  ||||||| |||||||||||||||||||   ||||| || |||||  |||| | ||||||| ||| ||||| |||||||||| |||||||| |    
T  14844 tcacaaagtgaatcctaagagaaaacactaaagga--gtttttgatgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaaccc 14941  T
Q  484 aagaaa-aaactctcatcaaaga 505  Q
    || ||| ||||||||| ||||||    
T  14942 aaaaaataaactctcaccaaaga 14964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 135 - 487
Target Start/End: Original strand, 20284001 - 20284351
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||| || ||| | |||||   |||||||||| |||||| ||    
T  20284001 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaagattgttgac 20284100  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||| ||| | | || ||||| |  |||||||||||||| | |||     
T  20284101 ccagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactaagatgaaagtgttacaa-tgcgttacaagaaattagcttata 20284197  T
Q  334 cgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 432  Q
     ||| ||||| |||||| | |||||||||| || || || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||    
T  20284198 agcttacaaaagaacaagtcctaatttctacccttttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcct 20284297  T
Q  433 tcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    |||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  20284298 tccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 20284351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 469
Target Start/End: Complemental strand, 5817278 - 5817122
Alignment:
Q  313 gttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacact 412  Q
    |||||||||||||  ||||   ||||||||||||||||  |||||||||||||||| || ||||||| | ||||| |||||||||| |||| |||||||     
T  5817278 gttacaagaaatttgcataagagctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactctcaatgaatcctaagaaaaaacaca 5817179  T
Q  413 aaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||||| ||||| || |||||  |  ||| |||||||| |||||||| |||||||    
T  5817178 aaaggaagctttttgatccttccaatggtgaaatctcactccccaaggtatttacaa 5817122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 469
Target Start/End: Original strand, 29159715 - 29160050
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| |  ||||   |||||||||| |||||| ||    
T  29159715 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacacaccaagattgttgac 29159814  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| |||||||| | | | ||| |||| |  ||||||| || ||||||||| | | || ||||||   |||||||||||||| | ||      
T  29159815 ccagttcggtccaatatgacctaatctaggggagagagca--gctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttaca 29159912  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttatt 430  Q
     ||| ||| ||||||||   |||||||||| ||||| |||  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| ||     
T  29159913 agcttacacaagaacaagacctaatttctacccatt-tttgtgtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatc 29160011  T
Q  431 cttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||||  |  ||| |||||||||||||||||||||||||    
T  29160012 cttccaatgttgaaatctcactacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 362
Target Start/End: Complemental strand, 28617372 - 28617184
Alignment:
Q  173 cataatcaaagcaacaaagataagcaagaagggaaggagacaa-cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 271  Q
    |||| ||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||||| | ||| |||||||||| ||| ||  ||||    
T  28617372 catattcaaagcaacaaagataagcaagaaaggaagaaaacaaacacaccaatattgtttacccagttcggtccaatatgacctactctggggg--agag 28617275  T
Q  272 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttcta 362  Q
    |  |||||||| || ||||| ||| | | ||||||||    |||||||||||||| | ||   ||||||||||||||||  ||||||||||    
T  28617274 agcagctctccaatccactaagatgaaagtgatacaatggggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttcta 28617184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 469
Target Start/End: Original strand, 55860 - 56194
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa--gaagggaaggagacaacacaccaacattgttta 232  Q
    ||||||||||||||||||||||  ||||||| || |  |||||||||||| ||||||||||||||  ||||| |||||   |||||||||| ||| || |    
T  55860 aaacagacctagatctaagtatagagcaacaccacaagcataatcaaagc-acaaagataagcaatggaaggaaaggaacaaacacaccaagattattga 55958  T
Q  233 cccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatat 332  Q
    ||||||||| | ||| |||||||| | ||| |   |||||  ||| |||| || ||||||||| | | || ||||||   |||||||||||||| | |||    
T  55959 cccagttcggtccaatatgacctaatctgggg---agagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 56055  T
Q  333 tcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagatttttta 428  Q
      ||| ||| ||||||||   |||||||||| ||||  |||  ||||||| |||||   | ||||||||| |||||||||||| ||| |||| ||||| |    
T  56056 aagcttacacaagaacaagacctaatttctacccat--tttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaaagaagctttttga 56153  T
Q  429 ttcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    | |||||  |  ||| |||||||||||||||||||||||||    
T  56154 tccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 467
Target Start/End: Complemental strand, 2647888 - 2647551
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||| ||| ||    
T  2647888 caacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacatcaagat 2647789  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 326  Q
    |||| ||||| ||||   ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | | || ||||||   ||||||||||||||    
T  2647788 tgttgacccaattcggcccaatatgacctattctgggggagagagca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 2647691  T
Q  327 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttt 425  Q
     | |||  ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| |||||||||| |||||||||||| ||| |||| ||||    
T  2647690 gcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaatgaatcctaagagaaaacacaaaatgaagttttt 2647593  T
Q  426 ttattcttcctctaatgagatctcactacccaaggtgtttac 467  Q
    | || |||||  |  ||| |||||||||||||||||| ||||    
T  2647592 tgatccttccaatggtgaaatctcactacccaaggtgcttac 2647551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 459
Target Start/End: Original strand, 3047335 - 3047489
Alignment:
Q  304 tacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaaga 403  Q
    |||||||  |||||||||||| ||| ||   |||||||||||||||   |||||||||| ||||| |||||||||||| ||||| |||||||||  ||||    
T  3047335 tacaaatgagttacaagaaatcaacttaaaagctcacaaagaacaagacctaatttctacccatt-tttaagtcacccacactctcaatgaatcttaaga 3047433  T
Q  404 gaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaag 459  Q
     ||||||| |||||||| ||||| || |||||  | |||| |||||||||||||||    
T  3047434 taaaacacaaaaggaagctttttgatccttccaatgatgaaatctcactacccaag 3047489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 487
Target Start/End: Complemental strand, 23403022 - 23402848
Alignment:
Q  313 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 411  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||| | ||||| |||||||||| ||||||||||||    
T  23403022 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcacatcactcacactctcaatgaatcctaagagaaaacac 23402923  T
Q  412 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
     |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  23402922 aaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23402848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 487
Target Start/End: Complemental strand, 9185153 - 9185009
Alignment:
Q  342 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 441  Q
    |||||||| | |||||||||| ||||| || |  |||||| |||||  ||||||||| ||||||||||||  ||||||| ||||| || |||||  |  |    
T  9185153 aagaacaagtcctaatttctacccatttttcatatcacccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggt 9185054  T
Q  442 gagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    || ||||||||||||||||||||||| |||| |||||||| |||||    
T  9185053 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9185009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 487
Target Start/End: Complemental strand, 9189986 - 9189842
Alignment:
Q  342 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 441  Q
    |||||||| | |||||||||| ||||| || |  |||||| |||||  ||||||||| ||||||||||||  ||||||| ||||| || |||||  |  |    
T  9189986 aagaacaagtcctaatttctacccatttttcatatcacccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggt 9189887  T
Q  442 gagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    || ||||||||||||||||||||||| |||| |||||||| |||||    
T  9189886 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9189842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 469
Target Start/End: Original strand, 2580508 - 2580635
Alignment:
Q  342 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 441  Q
    |||||||| | ||| |||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||| |  |  |    
T  2580508 aagaacaagtcctagtttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggt 2580607  T
Q  442 gagatctcactacccaaggtgtttacaa 469  Q
    || |||||||||||||||||||||||||    
T  2580608 gaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 313 - 487
Target Start/End: Complemental strand, 9235591 - 9235417
Alignment:
Q  313 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 411  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||||||||||| ||| |||||| ||||||||||||    
T  9235591 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccgcactctcaacgaatcctaagagaaaacac 9235492  T
Q  412 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
     |||||||| ||||| || ||| |  |  ||| || |||||| ||||||||||||| |||| |||||||| |||||    
T  9235491 aaaaggaagctttttgatccttgcaatggtgaaatatcactatccaaggtgtttac-aatgtttcccaacccaaga 9235417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 486
Target Start/End: Original strand, 49091512 - 49091924
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 171  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     |||||||||||| ||||| |  ||||||| || |     
T  49091512 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctagatttaagtgtagagcaacaccacaa 49091610  T
Q  172 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 270  Q
     ||||||||||||| ||||||||||||| ||| | |||||   ||| |||||| |||||| ||||||||   | ||| |||||||| | ||| |  ||||    
T  49091611 gcataatcaaagca-caaagataagcaatgaaagaaaggaacaaacgcaccaagattgttgacccagtttagtccaatatgacctaatctgggg--aaga 49091707  T
Q  271 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatta 369  Q
    ||  | |||||| || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| ||||||||   |||||||||| |||||     
T  49091708 gagcaactctccaatccactatgatgaaagtgttacaaaagagttacaagaaattaccttataagcttacacaagaacaagacctaatttctacccattc 49091807  T
Q  370 tttaagtcacccgcactcac---aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 466  Q
    | |  ||||||| ||||| |   ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||     
T  49091808 tgt--gtcacccacactctccataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttt 49091905  T
Q  467 caaatggttcccaacacaag 486  Q
    | |||| |||||||| ||||    
T  49091906 c-aatgtttcccaacccaag 49091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 469
Target Start/End: Complemental strand, 4796852 - 4796520
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||  | |||||   |||||||||| |||||| ||    
T  4796852 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgagagaaaggaacaaacacaccaagattgttaac 4796753  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | |||||||||||| | ||| ||  ||| |  ||| |||  || ||||||||| | | || ||||||   |||||||||||||| | |||     
T  4796752 ccagttcggtccaaaatgacctaatctggggg--agaaagcagccctcaaatccactatgatgaaattgttacaaaagagttacaagaaattagcttata 4796655  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 432  Q
     ||| ||| ||||||||   || |||| || ||||  |||  ||||||  || || |||||||||| |||||||||||| ||| |||| ||||| || ||    
T  4796654 agcttacacaagaacaagacctcatttatacccat--tttgtgtcacctacattctcaatgaatcctaagagaaaacacaaaaagaagctttttgatcct 4796557  T
Q  433 tcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||  |  ||| |||||||||||||||||||||||||    
T  4796556 tccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 465
Target Start/End: Complemental strand, 45685727 - 45685601
Alignment:
Q  339 acaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctct 438  Q
    ||||||||||||   ||||||||||||||| |||||||||| |  | || |||||||||| |||||||||||  |||| ||| |||||||| ||| || |    
T  45685727 acaaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaacaagaaagaaagtttttttatcctttcttt 45685628  T
Q  439 aatgagatctcactacccaaggtgttt 465  Q
     ||||||||| |||| | |||||||||    
T  45685627 gatgagatctgactatcaaaggtgttt 45685601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 469
Target Start/End: Complemental strand, 33332635 - 33332302
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    ||||| ||||| |||||||| |  ||||||| || |  |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  33332635 aaacaaacctaaatctaagtgtagagcaacaccataagcataatcaaatcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 33332536  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    ||||||||||  || |||||||| | ||| ||| |||| |  || |||| || ||||| ||| | | || ||||||   |||||||||||||| | |||     
T  33332535 ccagttcgatctaatatgacctaatctgggggagagagca--gccctccaatccactaagatgaaagtgttacaaaagagttacaagaaattagcttata 33332438  T
Q  334 cgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 432  Q
     ||| ||||| ||||||   ||||||||||  |||| ||  | |||| | ||||| |||||| ||| |||||||||||| || ||||| ||||| || ||    
T  33332437 agcttacaaaagaacaagacctaatttctactcatttttgta-tcacgcacactctcaatgattcctaagagaaaacacaaagggaagctttttgatcct 33332339  T
Q  433 tcctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |||  |  ||| ||||||||||||||| |||||||||    
T  33332338 tccaatggtgaaatctcactacccaagatgtttacaa 33332302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 467
Target Start/End: Original strand, 761219 - 761416
Alignment:
Q  269 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccatt 368  Q
    |||| |||||||||||| |||||||  | |||||| ||||||| ||||||| |||| | |  |   |||||||||||| |||  |||||||||| |||||    
T  761219 gagactagctctccgatccactatgtaaggaatgacacaaataggttacaataaatgagctcaaaagctcacaaagaaaaaacactaatttctacccatt 761318  T
Q  369 atttaagtcacccgcactcacaatgaatcca---aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 465  Q
     || ||||||     |||||||||| ||||    |||||  ||||||||| |||  ||||| || |||||||||||||||||||||||| ||| ||| ||    
T  761319 tttcaagtcat----actcacaatgcatcctcctaagaggtaacactaaatgaaactttttgatccttcctctaatgagatctcactactcaaagtgctt 761414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 9190241 - 9190071
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagca 185  Q
    ||||||||| ||||||||||  |||||| ||||| ||||||||||||    ||| |||||||||||||| |  ||||||| || |  ||||| |||||||    
T  9190241 aaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaacaaacctagatctaagtgtagagcaacaccacaagcataaacaaagca 9190143  T
Q  186 acaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 256  Q
    | |||||||||||| ||| |  ||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  9190142 ataaagataagcaatgaaagagaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 9190071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 487
Target Start/End: Complemental strand, 46516237 - 46516140
Alignment:
Q  389 caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
    |||||||||  |||||||||||| ||| |||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  46516237 caatgaatcttaagagaaaacacaaaatgaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaaga 46516140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 46516502 - 46516373
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| |||||||| || |||||||| | |||||||| || |  |||||||||||||| | |||||| ||| ||| | |||||   |||||||||| ||    
T  46516502 caacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaagcaatagagataaacaatgaaagaaaggaacaaacacaccaagat 46516403  T
Q  227 tgtttacccagttcgatgcaaaatgaccta 256  Q
    |||| |||||||||| | ||| ||||||||    
T  46516402 tgttgacccagttcggtccaatatgaccta 46516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 27984294 - 27984460
Alignment:
Q  39 tgttgtgaattcaaactaataa-taataccaatagaacttagatgtgtagattaaaggaagtagta--atcaatgaataaagtagtctcaagc------a 129  Q
    |||||||||||||||| ||||| | | | ||||| |||||| |||| | ||  ||||||| |||||  |||||||||||||||||||| ||||      |    
T  27984294 tgttgtgaattcaaacaaataaatcacatcaataaaacttatatgtttggagcaaaggaattagtataatcaatgaataaagtagtcttaagcaacgata 27984393  T
Q  130 acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 196  Q
    |||||||||| || || |||||||| |||||||| | || | ||||| | |||| ||||||||||||    
T  27984394 acaacaaacaaacttatatctaagtgtgaagcaataacacaaacatatttaaagaaacaaagataag 27984460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 23575564 - 23575488
Alignment:
Q  129 aacaacaaacagacctagatctaagtatgaagcaacatcaga--cacataatcaaagcaacaaagataagcaagaag 203  Q
    ||||||||||| |||||||||||||| ||||||| | |||||  || | || ||||||||| |||||||| ||||||    
T  23575564 aacaacaaacaaacctagatctaagtgtgaagcatcgtcagaggcataaaaccaaagcaactaagataagaaagaag 23575488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 27984633 - 27984686
Alignment:
Q  373 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 426  Q
    ||||||||| ||||||||||||||||  |||||||| |||||| |||| |||||    
T  27984633 aagtcacccacactcacaatgaatccttagagaaaatactaaatgaaggttttt 27984686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 9185396 - 9185284
Alignment:
Q  91 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagca 185  Q
    ||||||||| ||||||||||  |||||| ||||| ||||||||||||    |||||||||||||||||| |  || |||| || |  ||||| |||||||    
T  9185396 aaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaacagacctagatctaagtgtagagaaacaccacaagcataaacaaagca 9185298  T
Q  186 acaaagataagcaa 199  Q
    | ||||||||||||    
T  9185297 ataaagataagcaa 9185284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 469
Target Start/End: Original strand, 5595 - 5930
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  5595 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 5694  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| |||||||| | ||| ||  |||||  ||| || | || ||||||||| | | || ||||||   | |||||||||||| | |||     
T  5695 ccagttcggtccaatatgacctaatctggggg--agagagcagcccttcaatccactatgatgaaagtgttacaaaagagatacaagaaattagcttata 5792  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca---atgaatccaaagagaaaacactaaaggaagattttttat 429  Q
     ||| ||| ||||||||    |||||||||  |||  |||  ||||||| ||||| ||   |||||||| |||||||||||| |||||||| ||||| ||    
T  5793 agcttacacaagaacaagacttaatttctactcat--tttgtgtcacccacactctcaatgatgaatcctaagagaaaacacaaaaggaagctttttgat 5890  T
Q  430 tcttcctctaatgagatctcactacccaaggtgtttacaa 469  Q
     |||||  |  ||| |||||||||||||||||||||||||    
T  5891 ccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 487
Target Start/End: Original strand, 2404 - 2756
Alignment:
Q  135 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 233  Q
    |||||||||||||||||||| |  | ||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  2404 aaacagacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 2503  T
Q  234 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 333  Q
    |||||||| | ||| |||||||| | ||| ||  ||| |  ||| |||| || ||||||||| | | || ||||||    ||| ||||||||| | |||     
T  2504 ccagttcgctccaatatgacctaatctggggg--agacagcagccctccaatccactatgatgaaagtgttacaaaagaattataagaaattagcttata 2601  T
Q  334 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca---atgaatccaaagagaaaacactaaaggaagattttttat 429  Q
     ||| ||| ||||||||   |||||||||| ||||  |||  ||||||| ||||| ||   |||||||| |||| ||||||| |||||||| ||||| ||    
T  2602 agcttacacaagaacaagaactaatttctacccat--tttgtgtcacccacactctcaatgatgaatcctaagataaaacacaaaaggaagctttttgat 2699  T
Q  430 tcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 487  Q
     |||||  |  ||| |||||||||| |||||||||||| |||| |||||||| |||||    
T  2700 ccttccaatggtgaaatctcactacgcaaggtgtttac-aatgtttcccaacccaaga 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 85535 - 85659
Alignment:
Q  78 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 172  Q
    |||||||||||  ||||||||| ||||||||||  |||||| ||||| ||||||||||||    |||||||||||||||||| |  |||||||||| |      
T  85535 agatgtgtagagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaataaaacagacctagatctaagtgtagagcaacatcacaag 85633  T
Q  173 cataatcaaagcaacaaagataagcaa 199  Q
    ||||| |||||| ||||||||||||||    
T  85634 cataaccaaagc-acaaagataagcaa 85659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 271
Target Start/End: Original strand, 10634 - 10778
Alignment:
Q  128 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 226  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| |  ||||   |||||||||| ||    
T  10634 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacacaccaagat 10733  T
Q  227 tgtttacccagttcgatgcaaaatgacctactttggaggaaagag 271  Q
    | || |||||||||| | ||| |||||||| ||||| ||| ||||    
T  10734 tattgacccagttcggtccaatatgacctaatttgggggagagag 10778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 469
Target Start/End: Original strand, 23643 - 23777
Alignment:
Q  335 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaag-attttttattctt 433  Q
    ||||||||| |||||  ||||||||||| ||||| || | ||||  | |||||||||||||||| |||||||||||| ||| || |  |||||||| |||    
T  23643 gctcacaaaaaacaagatctaatttctacccatt-ttcatgtcagacacactcacaatgaatcctaagagaaaacacaaaatgatgccttttttatcctt 23741  T
Q  434 cctctaatgagatctcactacccaaggtgtttacaa 469  Q
    |   |  ||| |||||||||||||||||| ||||||    
T  23742 ctaatggtgacatctcactacccaaggtgattacaa 23777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University