View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_2 (Length: 1055)
Name: NF16378_high_2
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 377 - 1035
Target Start/End: Original strand, 46083369 - 46084030
Alignment:
| Q |
377 |
gtattaagaatgtccaaatggttgaactttgaagagaagccttgatgtaacggttgaaatggttagcatgtgactaggagatcacatattccaacggtga |
476 |
Q |
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| T |
46083369 |
gtattaagaatgtccaaatgtttgaactttgaagagaagccttgatgtaacggttgaaatggttagcatgtgactaggagatcacatattccaacggtga |
46083468 |
T |
|
| Q |
477 |
gattagtctcttgaaaatacaagagataagaatgcctacagtagaccacaatgagttagacacttccctaaacccaacataatagcagttttctgacacc |
576 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46083469 |
gattagtctcttgaaaatacaagagataagaatgcctacagtagaccacaatgagttagacacttccctaaacccaacatagtagcagttttctgacacc |
46083568 |
T |
|
| Q |
577 |
aagttaccgttttataggagtttcaattgttgcagcagtatctttaagaacccatgaagtcatattaagtatttaatagctggacctttttcagccaaac |
676 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46083569 |
aagttaccgttttataggagtttcaattgttgcagcagtatctttaagaacccatgaagtcatattaagtatttaatagctggacctttttcagccaaac |
46083668 |
T |
|
| Q |
677 |
aaataagtaaagagaaatatctttagcatcagccacaggctgatataatactcaatgacaagttatgactatctcccttc--nnnnnnnnngttatgact |
774 |
Q |
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| T |
46083669 |
aaataagtaaagagaaatatctttagcatcagccacaggctgatataatactcaatgacaagttatgactatctcccttcaaaaaaaaaaagttatgact |
46083768 |
T |
|
| Q |
775 |
atctcaaaatcaccttttctcatatcaattttataccttcttccctttttgtctctcttcctttggcatcacatttccaactttttctacatttcctttt |
874 |
Q |
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| T |
46083769 |
atctcaaaatcaccttttctcatatcaattttataccttcttccctttttgtctctcttcctttggcatcacaattccaactttttctacatttcctttt |
46083868 |
T |
|
| Q |
875 |
tatcttgttttaacccaatattgttctcagacta-ttttttccttgataaaagatcacagtgccgcactacttcaataaatcaaattttccaatgtatta |
973 |
Q |
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| T |
46083869 |
tatcttgttttaacccaatattgttctcagactatttttttccttgataaaagatcacagtgccgcactacttcaataaatcaaattttccaatgtatta |
46083968 |
T |
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| Q |
974 |
cctgttaagtccatagctttggcatgacaatcagacgaaaactcatttaacccatatccatc |
1035 |
Q |
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| T |
46083969 |
cctgttaagtccatagctttggcatgacaatcagaggaaaactcatttaacccatatccatc |
46084030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 46082934 - 46083293
Alignment:
| Q |
8 |
gacatcatcagatcacagacctatttattacctgcaaaactttcttctcttgttccatctcaaggagtttcttttcataatgatgcctgataactgaagt |
107 |
Q |
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| T |
46082934 |
gacatcatcagatcacagacctatttattacctgcaaaactttcttctcttgttccatctcaaggagtttcttttcataatgatgcctgataactgaagt |
46083033 |
T |
|
| Q |
108 |
atcagaattactgtacaacttcatttcagccttcaaccaaagnnnnnnnn-gggagaaatgtgtcagaaagaaaatcatatgcccacaaaacatgtaata |
206 |
Q |
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| T |
46083034 |
atcagaattactgtacaacttcatttcagccttcaaccgaagaaaaaaaaagggagaaatgtgtcagaaagaaaatcatatgcccacaaaacatgtaata |
46083133 |
T |
|
| Q |
207 |
cagtacaactagataacaacaactattacctctttttgttcaagtttctcatccaattctttgagctctttatccaacttttcttgaagagatgagtgtt |
306 |
Q |
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| T |
46083134 |
cagtacaactagataacaacaactattacctctttttgttcaagtttctcatccaattctttgagctctttatccaacttttcttgaagagatgagtgtt |
46083233 |
T |
|
| Q |
307 |
cttgctccttttcatcatcttctgtatcatctgtaaataaattatagatattcgtgaagg |
366 |
Q |
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| T |
46083234 |
cttgctccttttcatcatcttctgtatcatctgtaaataaattatagatattcgtgaagg |
46083293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 27959306 - 27959229
Alignment:
| Q |
29 |
tatttattacctgcaaaactttcttctcttgttccatctcaaggagtttcttttcataatgatgcctgataactgaag |
106 |
Q |
| |
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|||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||| ||| ||| |||||||| |
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| T |
27959306 |
tattgattacctgcaaaaatttcttctcatgttccaactcattaagtttcttttcataatgttgcttgagaactgaag |
27959229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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