View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_21 (Length: 503)
Name: NF16378_high_21
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 531986 - 531495
Alignment:
| Q |
1 |
aatatgataaaccaaagtttaaattttgaattgcccacatttcatgttcgacaatatctcaaatacaatttacattggtagagaaaacctagaagaaaca |
100 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
531986 |
aatatggtaaaccaaagtttaaattttgaattgtccacatttcatgttcgacaatatctcaaatacaatttacatcggtagagaaaacctagaagaaact |
531887 |
T |
|
| Q |
101 |
aggnnnnnnnn----------cccacattgttacccatgacaaacaagtagtttatcattatttattatcataagaaaatcaaagtatatgtacccaaat |
190 |
Q |
| |
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||| |||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
531886 |
aggagaaaaagaaaaaaaaaacccataatgttacccatgataaacaagtagtttatcatt---tattatcataagaaaatcaaagtatatgtacccaaat |
531790 |
T |
|
| Q |
191 |
accctcactaggaatttgtgcgttgaccacaaatagtagataaaaacctggaggtgcaagaataggtgaattcggcacggtaacttcaatttcatatgtt |
290 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
531789 |
accctcgctaggaatttgtgcgtttaccacaaatagtagataaaaacctggaggtgcaagaataggtgaattcggcacggtaacttcaatttcatatgtt |
531690 |
T |
|
| Q |
291 |
gttccgttcacacgattcactttattttgctccaacaccaacaacctttgattcattgagaatgaatgtgtattaaaaggcggcaacaacattgttacat |
390 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
531689 |
gttccgttcacacgatttactttattttgctccaacaccaacaacctttgattcattgagaatgaatgtgtattaaaaggcggcaacaacattgtgacat |
531590 |
T |
|
| Q |
391 |
gtactaaattcaagtattttaatgttctgttcacttgaaattgaagctccaatttctcaccatactttaattccatttgagtcttagaatcaaga |
485 |
Q |
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| T |
531589 |
gtactaaattcaagtattttaatgttctgttcacttgaaattgaagctccaatttctgaccatactttaattccatttgagtcttagaatcaaga |
531495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 370
Target Start/End: Complemental strand, 7571644 - 7571439
Alignment:
| Q |
165 |
gaaaatcaaagtatatgtacccaaataccctcactaggaatttgtgcgttgaccacaaatagtagataaaaacctggaggtgcaagaataggtgaattcg |
264 |
Q |
| |
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|||||| ||||||| |||| |||||| || ||||||||||||| | | |||||||||||||||||||| || ||||| ||||||||||||||| || |
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| T |
7571644 |
gaaaattaaagtatttgtatccaaattccttcactaggaatttctttatgaaccacaaatagtagataaaatccaggaggcgcaagaataggtgaacccg |
7571545 |
T |
|
| Q |
265 |
gcacggtaacttcaatttcatatgttgttccgttcacacgattcactttattttgctccaacaccaacaacctttgattcattgagaatgaatgtgtatt |
364 |
Q |
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||| ||||| | || ||||| |||||||| | |||| ||||||||| ||| |||||||||||||||||| |||||||| |||||||| ||||| || |
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| T |
7571544 |
gcatagtaacctgaacatcatacgttgttccctccacaatattcactttgtttgactccaacaccaacaacctctgattcatggagaatgagtgtgtgtt |
7571445 |
T |
|
| Q |
365 |
aaaagg |
370 |
Q |
| |
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|||||| |
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|
| T |
7571444 |
aaaagg |
7571439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 52914623 - 52914580
Alignment:
| Q |
326 |
caccaacaacctttgattcattgagaatgaatgtgtattaaaag |
369 |
Q |
| |
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||||||||||||||||||||||||||| ||||| || ||||||| |
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|
| T |
52914623 |
caccaacaacctttgattcattgagaaagaatgcgtgttaaaag |
52914580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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