View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_23 (Length: 492)
Name: NF16378_high_23
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 170 - 471
Target Start/End: Complemental strand, 8636238 - 8635937
Alignment:
| Q |
170 |
attctccaggggatgaggaggaaaataaaccccggaaagataataacaatccccactaccctaaaacctctcctattactacatatccagaaacaaataa |
269 |
Q |
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| T |
8636238 |
attctccaggggatgaggaggaaaataaaccccggaaagataataacaatccccactaccctaaaacctctcctgttactacatatccagaaacaaagaa |
8636139 |
T |
|
| Q |
270 |
agttagtcttttgtccattggtcgatcaatggatggtggttgtctttaatcgggtaccttttacgctaattagtttttccactgtgttgaggaatttgga |
369 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8636138 |
agttagtcttttgtccattgttcgatcaatggatggtgtttgtctttaatcgggtaccttttacgctaattagtttttccactgtgttgaggaatttgga |
8636039 |
T |
|
| Q |
370 |
gaataatcaaatggttcttcaagacaaagctgcacttcaagagcttgctggagattcaagagatccaacacttgcggttgagatagctttgaggtcaatg |
469 |
Q |
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| T |
8636038 |
gaataatcaaatggttcttcaagacaaagctgcacttcaagagcttgctggagattcaagagagccaacacttgcggttgagatagctttgaggtcaatg |
8635939 |
T |
|
| Q |
470 |
gc |
471 |
Q |
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|| |
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| T |
8635938 |
gc |
8635937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 171 - 378
Target Start/End: Original strand, 8622843 - 8623052
Alignment:
| Q |
171 |
ttctccaggggatgaggaggaaaataaaccccggaaagataataacaatccccactaccctaaaacctctcctattactacatatccagaaacaaataaa |
270 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| || || ||||||||||| |||| ||| |
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| T |
8622843 |
ttctccaggggatgaggaggaaaataaaccccggaaggatagtaacaatcctcactaccctaaaacctctctcgttgctgcatatccagaatcaaagaaa |
8622942 |
T |
|
| Q |
271 |
gttagtcttttgtccattggtcgatcaatggatggtggttgtctttaa--tcgggtaccttttacgctaattagtttttccactgtgttgaggaatttgg |
368 |
Q |
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||||||||||||||||||| |||||||||| ||||| || | ||| | |||||| |||||||||||||||||| |||||||| |||||||||||||| |
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| T |
8622943 |
gttagtcttttgtccattgttcgatcaatgtatggtattttttttttaggccgggtatcttttacgctaattagttcttccactgggttgaggaatttgg |
8623042 |
T |
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| Q |
369 |
agaataatca |
378 |
Q |
| |
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|||||||||| |
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| T |
8623043 |
agaataatca |
8623052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 8636392 - 8636303
Alignment:
| Q |
16 |
tgaagccttccgaggtgagacttgtcgtttaagtcacaagtgatgaagagtttgatgctattgaaatattatcctcctttataaacattc |
105 |
Q |
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| T |
8636392 |
tgaagccttccgaggttagacttgtcgtttaagtcacaagtgatgaagagtttgatgctattgaaatattatcctcttttataaacattc |
8636303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 8622682 - 8622771
Alignment:
| Q |
16 |
tgaagccttccgaggtgagacttgtcgtttaagtcacaagtgatgaagagtttgatgctattgaaatattatcctcctttataaacattc |
105 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
8622682 |
tgaagccttccgaggtgagacttgtcatttaagtcacaagtgatgaagagtttgatgctattgaaatattatcctcttatataaacattc |
8622771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 8623054 - 8623101
Alignment:
| Q |
424 |
ttcaagagatccaacacttgcggttgagatagctttgaggtcaatggc |
471 |
Q |
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||||||||| |||||||||| ||||| ||||||||||||||||||||| |
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| T |
8623054 |
ttcaagagagccaacacttgtggttgtgatagctttgaggtcaatggc |
8623101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 476
Target Start/End: Complemental strand, 43914839 - 43914585
Alignment:
| Q |
227 |
accctaaaacctctcctattactacatatccagaaacaaataaagttagtcttttgtccattggtcgatcaatggatggtggttgtctttaa--tcgggt |
324 |
Q |
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||||||||| ||||| | |||||| | |||||||| | | ||||||||| ||||||||||| ||||||||||| || || |||||||| | ||| || |
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| T |
43914839 |
accctaaaatctctcttgttactaaaaatccagaatctgagaaagttagttctttgtccattgttcgatcaatggttgctgtttgtcttttaagtcgagt |
43914740 |
T |
|
| Q |
325 |
accttttacgctaattagtttttccactgtgttgaggaatttggagaataatcaaatggttcttc---aagacaaagctgcacttcaagagcttgctgga |
421 |
Q |
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||||||| | | ||| || ||||||| | ||| |||| |||||||| |||||| |||| | | |||||||||| |||||||||||||||| |||| |
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| T |
43914739 |
acctttttcacctattgattcttccactttattgtggaaattggagaacgatcaaacggttatgccacaagacaaagccgcacttcaagagcttggtgga |
43914640 |
T |
|
| Q |
422 |
gattcaagagatccaacacttgcggttgagatagctttgaggtcaatggcggatg |
476 |
Q |
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|||||| ||| ||||| ||||| || ||||||||||||||||||||||| |||| |
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| T |
43914639 |
gattcaggagggccaacgcttgcagtcgagatagctttgaggtcaatggcagatg |
43914585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 37290169 - 37290131
Alignment:
| Q |
16 |
tgaagccttccgaggtgagacttgtcgtttaagtcacaa |
54 |
Q |
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||||||||| |||| |||||||||||||||||||||||| |
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| T |
37290169 |
tgaagcctttcgagatgagacttgtcgtttaagtcacaa |
37290131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 389 - 476
Target Start/End: Original strand, 42837616 - 42837703
Alignment:
| Q |
389 |
caagacaaagctgcacttcaagagcttgctggagattcaagagatccaacacttgcggttgagatagctttgaggtcaatggcggatg |
476 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| || |||||||||||||| |||||||| |||| |
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| T |
42837616 |
caagacaaagctgcatttcaagagcttgctggagattcaggagggccaacgcttgcagtcgagatagctttgagatcaatggcagatg |
42837703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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