View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_27 (Length: 471)
Name: NF16378_high_27
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 458
Target Start/End: Original strand, 40060916 - 40061368
Alignment:
| Q |
21 |
atgaatatggtatgtccttcagcctacatactaaatatatgatgttcatgttgtagccatcacaaa-tgtaccactggtaatacatcgaagaagataaat |
119 |
Q |
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| T |
40060916 |
atgaatatggtatgtccttcagcctacatactaaatatatgttgttcatgttgtagccatcacaaaatgtaccaccggtaatacatcgaagaagataaat |
40061015 |
T |
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| Q |
120 |
taataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtgtttt--------------ttaatatatttgctatat |
205 |
Q |
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| T |
40061016 |
taataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtgttttttaatatatattttttaatatatttgctatat |
40061115 |
T |
|
| Q |
206 |
actgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaaga |
305 |
Q |
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| T |
40061116 |
actgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacctaaga |
40061215 |
T |
|
| Q |
306 |
ttacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtctttggatagaatttattttgtaac |
405 |
Q |
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| T |
40061216 |
ttacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtcttaggatagaatttattttgtaac |
40061315 |
T |
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| Q |
406 |
taaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
458 |
Q |
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| T |
40061316 |
taaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
40061368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 63 - 428
Target Start/End: Original strand, 40086858 - 40087228
Alignment:
| Q |
63 |
tgttcatgttgtagccatcacaaatgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagag |
162 |
Q |
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| T |
40086858 |
tgttcatgttgtagccgtcacaaatacaacactggtaatacatcgaagaagataaattgataatatcacatggatagtttatttcttatatgtagaagag |
40086957 |
T |
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| Q |
163 |
aaattacactggacaattgtgttttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggcc |
262 |
Q |
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| T |
40086958 |
aaattacactggacgattggattttttaatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggcc |
40087057 |
T |
|
| Q |
263 |
gtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgccc |
362 |
Q |
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| T |
40087058 |
ataaagctttgtgaagaagcattaatagccgcagaacccaagattacttatcttggtccaaacctagaggtatagatggtttatattgaaatttttgttc |
40087157 |
T |
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| Q |
363 |
gttt-----atcttatttcgcgtctttggatagaatttattttgtaactaaaactcatccagtttgtcaat |
428 |
Q |
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| T |
40087158 |
gtttgaaacatcttattccgcgtcttaggatataatttattttgtaactaaaactcatctggtttgtcaat |
40087228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 63 - 359
Target Start/End: Original strand, 40079085 - 40079393
Alignment:
| Q |
63 |
tgttcatgttgtagccatcacaaatgtaccactggtaatacatcg-------aagaagataaattaataatatcacatgcatagtttatttcttatatgc |
155 |
Q |
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| T |
40079085 |
tgttcatgttgtagccatcgcaaatgcaccactggtaatacctcggtcctcgaagaagataaattaataatattacacgcatagttattttcttttattt |
40079184 |
T |
|
| Q |
156 |
acaagagaaattacactggacaatt----gtgttt-tttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagat |
250 |
Q |
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| T |
40079185 |
agaagagaaattacactggacaattttctgtgtgtgtttaatatctctactatacgctgcaggaattattaggcagcaaaagtggggtcatcttaaagat |
40079284 |
T |
|
| Q |
251 |
ttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattg |
350 |
Q |
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| T |
40079285 |
gtacacaaggccataaagctttgtgaagaagcactaatagctactgatcccaagatttcatctcttggtcaaaacctagaggtataggtggtatgtattg |
40079384 |
T |
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| Q |
351 |
aaatttttg |
359 |
Q |
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| T |
40079385 |
aaatttttg |
40079393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
208 |
tgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
291 |
Q |
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||||||| |||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| |
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| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
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