View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_29 (Length: 466)
Name: NF16378_high_29
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 43920927 - 43920498
Alignment:
| Q |
18 |
cttcttctatcaagttattattatgttaaaaaatcctacctatgttaagctttgttatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920927 |
cttcttctatcaagttattattatgttaaaaaatcctacctatgttaagctttgctatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgt |
43920828 |
T |
|
| Q |
118 |
taaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatgattattttaaattttttaatctaatattgggtttattaggatcatagttata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43920827 |
taaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatgattattttaaattttttaatctaatattaggtttattaggatcatagttata |
43920728 |
T |
|
| Q |
218 |
gacttatatagaatttatttatatggctcttcgtgtaggtacttcttggagacatgggaacaggaaagactagtttagcattaagatttgttaaaggcca |
317 |
Q |
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| T |
43920727 |
gacttatatagaatttatttatatggctcttcttgtaggtacttcttggagacatgggaacaggaaagactagtttagcattaagatttgttaaaggcca |
43920628 |
T |
|
| Q |
318 |
gttctttcagaatcaggtttacttccattttatatcaataaatgaaatatacnnnnnnnaattaatattattattattaacagagtttagtaaccttcat |
417 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43920627 |
gttctttcagaatcaggtttacttccatttcatatcaataaatgaaatatactttttttaattaatattattattattaacagagtttagcaaccttcat |
43920528 |
T |
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| Q |
418 |
ataaattaatgtacacataggaaccaacca |
447 |
Q |
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| T |
43920527 |
ataaattaatgtacacataggaaccaacca |
43920498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 23714969 - 23714881
Alignment:
| Q |
77 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
166 |
Q |
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| T |
23714969 |
catagccggtcccaagtccaggtaaaagaagagggttgtgttagacttgagca-attaacgtaaaactttatctaatccctatgacatga |
23714881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 24102641 - 24102553
Alignment:
| Q |
77 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
166 |
Q |
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| T |
24102641 |
catagccggtcccaagtccaggtaaaagaagagggttgtgttagacttgagca-attaacgtaaaactttatctaatccctatgacatga |
24102553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 2793070 - 2793138
Alignment:
| Q |
97 |
ggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
166 |
Q |
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| T |
2793070 |
ggtaaaaggagacggttatgttaagcttgggcagcaaa-cataaaactttgtccaatatctatgacatga |
2793138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 26916275 - 26916327
Alignment:
| Q |
68 |
tttgttatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgttaa |
120 |
Q |
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|||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
26916275 |
tttgttatgcatagccggtcccaagcccaggtagaaggagagggttgtgttaa |
26916327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 26916218 - 26916268
Alignment:
| Q |
68 |
tttgttatgcatagccggtcaaaatcccaggtaaaaggagagggttgtgtt |
118 |
Q |
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|||| ||||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
26916218 |
tttgctatgcatagccggtcccaagcccaggtaaacggagagggttgtgtt |
26916268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 39668868 - 39668780
Alignment:
| Q |
77 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga |
166 |
Q |
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| T |
39668868 |
catagccggtcccaagcccgggtaaaaggtgagggttgtgttagtcctcgacagccaa-cgtaaaactttgtcgaatctctatgacatga |
39668780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 36915398 - 36915440
Alignment:
| Q |
77 |
catagccggtcaaaatcccaggtaaaaggagagggttgtgtta |
119 |
Q |
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| T |
36915398 |
catagccggtccaaagcccagataaaaggagagggttgtgtta |
36915440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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