View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_3 (Length: 685)

Name: NF16378_high_3
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_3
NF16378_high_3
[»] chr3 (1 HSPs)
chr3 (19-667)||(52761330-52761978)


Alignment Details
Target: chr3 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 19 - 667
Target Start/End: Complemental strand, 52761978 - 52761330
Alignment:
Q  19 tcatctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761978 tcatctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacct 52761879  T
Q  119 acgcttcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcctcaatttcaaatgattgtgtattgaactccaaaacaattaaatgc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52761878 acgcttcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcttcaatttcaaatgattgtgtattgaactccaaaacaattaaatgc 52761779  T
Q  219 ttcttttgattttcatttggaaatttgaccaaaatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatt 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761778 ttcttttgattttcatttggaaatttgaccaagatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatt 52761679  T
Q  319 tactagaccagattggaaagcttacggttttatcaaataggttaaaagatgtggggaaatgtcccgtaagttgcgtttatttaaggagcaaatgaaaaag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52761678 tactagaccagattggaaagcttacggttttatcaaataggttaaaagatgtggggaaatgtcgcgtaagttgcgtttatttaaggagcaaatgaaaaag 52761579  T
Q  419 gcaaatatatctccgtcaacatggtcaacgagagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttcta 518  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761578 gcaaatatatctccgtcaacatggtcaacaagagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttcta 52761479  T
Q  519 ccgtacatttaagatagcattgccatgcaacacaatttttcttcatggatataggttaaactagcagaacttgaagctgagctaattgagattaattcaa 618  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52761478 ccgtacatttaagagagcattgccatgtaacacaatttttcttcatggatataggttaaactagcagaacttgaagccgagctaattgagattaattcaa 52761379  T
Q  619 acaatgagaagttgcagcacacttataatgaacttatagagtacaagct 667  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761378 acaatgagaagttgcagcacacttataatgaacttatagagtacaagct 52761330  T

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