View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_30 (Length: 459)
Name: NF16378_high_30
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 31516281 - 31516735
Alignment:
| Q |
1 |
atataaaggtggagcttggtctactttcttttactaataataattaaaagtatatcatcttgttctaatttcgagtccatatttctaagaactcaaagaa |
100 |
Q |
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| T |
31516281 |
atataaaggtggagcgtggtctactttcttttactaataataattaaaagtatatcatcttgttccaatttcgagtccatatttctaagaactcaaagaa |
31516380 |
T |
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| Q |
101 |
aatgctggaaaaacaaatgtggatgcatactcgtaaattacaattattactaaaaaagaca-----------tacaatttttgcttatatttcattatag |
189 |
Q |
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| T |
31516381 |
aatgctggaaaaacaaatgtggatgcatactcgtaaattacaattattactaaaaaagacaatagttaaacatacaatttttgcttatatttcattatag |
31516480 |
T |
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| Q |
190 |
agtgagtaactgcttagattacaacaatgaaagttatttgattaagcgtgaaaaacgacaannnnnnnacacgtatttttcatgcaattctaagaaatta |
289 |
Q |
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| T |
31516481 |
agtgagtaactgcttagattacaacaatgaaagttatttgattaagcgcgaaaaacgacaatttttttacacgtatttttcatgcaattctaagaaatta |
31516580 |
T |
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| Q |
290 |
aacatcaacaagaatccgaaccttgatttccaattttccgactttggcggtggtgacattgagtgcaggcggaaatccaatgctggaatgtaatgcatca |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516581 |
aacatcaacaagaatccgaaccttgatttccaattttccgactttggcggtggtgacattgagtgcaggcggaaatccaatgctggaatgtaatgcatca |
31516680 |
T |
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| Q |
390 |
ccgtttatatctgaatacaggaaattcaaaaacaaacgaatcattgtgatgatta |
444 |
Q |
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| T |
31516681 |
ccgtttatatctgaatacaggaaattcaaaaacaaacgaatcattgtgatgatta |
31516735 |
T |
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