View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_39 (Length: 404)
Name: NF16378_high_39
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 62 - 356
Target Start/End: Complemental strand, 52139549 - 52139250
Alignment:
| Q |
62 |
tcatattttgctctttcattttctaaatattttggtgataaattgttcaattgatannnnnnnn-----gtaggtaaccaatctgcttgttgcttctctg |
156 |
Q |
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| T |
52139549 |
tcatattttgctctttcattttctaaatattttagtgataaattgtctaattgatatatttatttttttgtaggtaaccaatctgcttgttgcttctctg |
52139450 |
T |
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| Q |
157 |
caatcaaaactagtcttggcaagtgattttctgagaaacactatatgggatccgaaagagtagtttgtgtttttcttatcatgtactaatattaccaaaa |
256 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
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| T |
52139449 |
taatcaaaactggtattggcaagtgattttctgagaaacactatatgggatccgaaagagtagtttgtctatttcttatcatgtactaatattatcaaaa |
52139350 |
T |
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| Q |
257 |
tgggtagaatgactattttggttttagactattatgttctacttgactacatttttgcgatatagtgatttcaatgaactagacctattgtattcttatt |
356 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52139349 |
tgggtagaatgacaattttggtttttgactattatgttctacatgactacatttttgtgatatagtgatttcaatgaactagacctattgtattcttatt |
52139250 |
T |
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