View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_4 (Length: 668)
Name: NF16378_high_4
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 14 - 652
Target Start/End: Original strand, 2685309 - 2685947
Alignment:
| Q |
14 |
catcaggataatctctaatatcattaagttcaccaatccacataacacaaccacttccaccattagtcacataaacattagcataaccagtacaagaaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685309 |
catcaggataatctctaatatcattaagttcaccaatccacataacacaaccacttccaccattagtcacataaacattagcataaccagtacaagaaca |
2685408 |
T |
|
| Q |
114 |
attcctatgacacatatcaccacattccttaattcccattgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaat |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685409 |
attcctatgacacatatcaccacattccttaatccccattgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaat |
2685508 |
T |
|
| Q |
214 |
ttatcactctcacaatccaaattcttattcctcacacacccatcagacccatctctcaatttccaagcttgttcattcttaggactaaaacctttcacac |
313 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2685509 |
ttatcactctcacattccaaattcttattcctcacacacccatcagacccatctctcaatttccaagcttgttcatttttaggactaaaacctttcacac |
2685608 |
T |
|
| Q |
314 |
attgacaaacaggtgaagcatttgtgtcacataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtcca |
413 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685609 |
attgacaaacaggtgaaccatttgtgtcgcataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtcca |
2685708 |
T |
|
| Q |
414 |
tgttttcatactttgtatccatgttcgacgttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtag |
513 |
Q |
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| T |
2685709 |
tgttttcatactttgtatccatgttcgacgttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtag |
2685808 |
T |
|
| Q |
514 |
ttaacaccgtgttggtttgatgaaaaattgaaaactattgaatctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccac |
613 |
Q |
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| T |
2685809 |
ttaacaccgtgttggtttgatgaaaaattgaaaactattgaatctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccac |
2685908 |
T |
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| Q |
614 |
ttcgatatattatgttatcatcattccgtaggaaaatct |
652 |
Q |
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| T |
2685909 |
ttcgatatattatgttatcatcattccgtaggaaaatct |
2685947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 8e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 36361761 - 36361365
Alignment:
| Q |
17 |
caggataatctctaatatcattaagttcaccaatccacataacacaaccacttccaccattagtcacataaacattagcataaccagtacaagaacaatt |
116 |
Q |
| |
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|||||||| |||||||||| |||||||| ||| |||||||||||||||| ||||||||| | | | || ||| ||||||||||||||||||||||| |
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| T |
36361761 |
caggataaattctaatatcaataagttcatcaagccacataacacaaccaattccaccatcaacaatctcaatatttgcataaccagtacaagaacaatt |
36361662 |
T |
|
| Q |
117 |
cctatgacacatatcaccacattccttaattcccattgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaattta |
216 |
Q |
| |
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||| | ||||| |||||||||||| | | ||| || | ||||||||||| |||||||| || |||||||||||| ||||| | ||||| ||| |
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| T |
36361661 |
ccttttacacaaatcaccacattcaaccaaactcatactcctattcacaaaaacactacttgtctctggtaacttcacattcaccatatgcaaaaactta |
36361562 |
T |
|
| Q |
217 |
tcactctcacaatccaaattcttattcctcacacacccatcagacccatctctcaatttccaagcttgttcattcttaggactaaaacctttcacacatt |
316 |
Q |
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||||||||||||||||| | |||||||||| ||| |||||||| ||||||||||| ||||| ||||| | |||||| || | ||| ||||| | ||| | |
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| T |
36361561 |
tcactctcacaatccaactcattattcctcaaacatccatcagatccatctctcaaattccatgcttgatgattctttggtcgaaaccctttaatacaat |
36361462 |
T |
|
| Q |
317 |
gacaaacaggtgaagcatttgtgtcacataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtcca |
413 |
Q |
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||||||||||||||||||||||||||| | |||| | |||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
36361461 |
tacaaacaggtgaagcatttgtgtcacacacaccaaatggaccacactctttgtaattatcacattggtcttttggtgcataccaaaattttgtcca |
36361365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 616
Target Start/End: Complemental strand, 36361228 - 36361162
Alignment:
| Q |
550 |
attgaatctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccacttc |
616 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||| || |||| |||||||||||||||||||| |
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| T |
36361228 |
attgaatctgtaactggttgcatctctggtacaccactgaatcttttaccattccatggtccacttc |
36361162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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