View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_40 (Length: 400)
Name: NF16378_high_40
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 194 - 390
Target Start/End: Original strand, 44137266 - 44137464
Alignment:
| Q |
194 |
cttgagcctagctctttgcccatagaacttaacgccacgaatattgttctagcgcccaagatagac--ccctgaaactatgaaggacctccgtccgatat |
291 |
Q |
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| T |
44137266 |
cttgagcctagctctttgcccatagaacttaacgccacgaatattgttctagcgcccaagatagacacccctgaaactatgaaggacctccgtcctatat |
44137365 |
T |
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| Q |
292 |
ccttatgcaatgtgctatacaaagtaatctccaaggtactcgccaaccgcctccgtcctctcattaacaaatggatctcaccagaacagtctgcctttg |
390 |
Q |
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| T |
44137366 |
ccttatgcaatgtgctctacaaagtaatctccaaggtactcgccaaccgcctccgtcctctcattaacaaatggatctcaccagaacagtctgcctttg |
44137464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 44137148 - 44137263
Alignment:
| Q |
19 |
aacagatgacgacaataccttgctcacccggcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccgaccctgat |
118 |
Q |
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| T |
44137148 |
aacagatgacgacaataccttgctcacccggcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccgaccctgat |
44137247 |
T |
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| Q |
119 |
ggacttaatccagctt |
134 |
Q |
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| T |
44137248 |
ggacttaatccagctt |
44137263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 14646195 - 14646260
Alignment:
| Q |
265 |
aaactatgaaggacctccgtccgatatccttatgcaatgtgctatacaaagtaatctccaaggtac |
330 |
Q |
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| T |
14646195 |
aaactatgaaggacctccgtccgatatctttatgtaatgtgctctacaaagtcatctccaaggtac |
14646260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 29015626 - 29015691
Alignment:
| Q |
77 |
acaatttttagcatgcatccagataagtctcccgaccctgatggacttaatccagctttctttcaa |
142 |
Q |
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| T |
29015626 |
acaattttcagcatgcacctagataagtctcccggccccgatggccttaatcctggtttctatcaa |
29015691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 32496891 - 32496995
Alignment:
| Q |
49 |
gcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccgaccctgatggacttaatccagctttctttcaatgcttc |
148 |
Q |
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| T |
32496891 |
gcctttctctgaacaagaattcaaagaagctatttttagtatgcaccccgataaatctccgggccctgatggcctcaacccggctttcttccaaaggttc |
32496990 |
T |
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| Q |
149 |
tggaa |
153 |
Q |
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||||| |
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| T |
32496991 |
tggaa |
32496995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 43895825 - 43895929
Alignment:
| Q |
49 |
gcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccgaccctgatggacttaatccagctttctttcaatgcttc |
148 |
Q |
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||||||||||||| |||||||| ||| | |||||||| ||||| || ||||| ||||| | ||||||||| || || || |||||||| ||| | ||| |
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| T |
43895825 |
gcctttctctgaacaagaattcaaagaagctatttttagtatgcaccccgataaatctccgggccctgatggcctcaacccggctttcttccaaaggttc |
43895924 |
T |
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| Q |
149 |
tggaa |
153 |
Q |
| |
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||||| |
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| T |
43895925 |
tggaa |
43895929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 23148614 - 23148718
Alignment:
| Q |
49 |
gcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccgaccctgatggacttaatccagctttctttcaatgcttc |
148 |
Q |
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||||||||||||| |||||||| ||| | |||||||| ||||| || ||||| ||||| | ||||||||| || || || |||||||| ||| | ||| |
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| T |
23148614 |
gcctttctctgaacaagaattcaaagaagctatttttagtatgcaccccgataaatctccgggccctgatggcctcaacccggctttcttccaaaggttc |
23148713 |
T |
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| Q |
149 |
tggaa |
153 |
Q |
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||||| |
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| T |
23148714 |
tggaa |
23148718 |
T |
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