View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_43 (Length: 386)
Name: NF16378_high_43
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 43789167 - 43789530
Alignment:
| Q |
10 |
cacagatgccgtttgaggtaatggtgccggagttta--acatgctggtgatgtcgtcgggatttttctcgacaaatacattaccaccgatgccgtttgag |
107 |
Q |
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| T |
43789167 |
cacagatgacgtttgaggtaatggtgccggagtttataacacgccggt-atgtcgtcgggatttttctcgacaaatacattaccaccgatgccgtttgag |
43789265 |
T |
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| Q |
108 |
gtctttcccaccgttacaagcatgcagtcgcagacggtggtatctttcaatgacgtttggcctgggaataacatctctgcaagtccgtcgaattttcttc |
207 |
Q |
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| T |
43789266 |
gtctttcccacagttacaagcatgcagtcgcagacggtggtatctttcaatgacgtttggcctgggaataacatctctgcaagtccgtcgaattttcttc |
43789365 |
T |
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| Q |
208 |
ccagcgacgttgttccgccgcagatgccaccgaaccagttcagttcttttgatttcgactaagtttatttcttcttgttctttcatacattcattatatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43789366 |
ccagcgacgttgttccgccgcagatgccaccgaaccagttcagttcttttgatttcgactaagtttatttcttcttgttctttcatacattcattatatt |
43789465 |
T |
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| Q |
308 |
ctctttagttatgtttgtgtcgggagaatacaacactcctttagtgggttttcgtatgtgttatg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43789466 |
ctctttagttatgtttgtgtcgggagaatacaacactcctttagtgggttttcgtatgtgttatg |
43789530 |
T |
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