View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_44 (Length: 380)
Name: NF16378_high_44
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 81 - 369
Target Start/End: Original strand, 5625413 - 5625701
Alignment:
| Q |
81 |
aagaccaaatcttttatcacttttctgtttaaatttttaccaactaaaacctccatagaaccaaaaacaatcgcccaataatccaaaagaattagtactt |
180 |
Q |
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| T |
5625413 |
aagaccaaatcttttatcacttttctgtttaaatttttaccaactaaaacctccatagaaccaaaaacaatcgcccattaatccaaaagaattagtactt |
5625512 |
T |
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| Q |
181 |
catttgttctaaaattgtcttcggttttctccacacatattaataaaagctagcaataaattaaagaatgttgtgcccatggagtatcgtttagcattct |
280 |
Q |
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| T |
5625513 |
catttgttctaaaattgtcttcggttttctccacacatattaataaaagctagcaataaattaaagaatgttgtgcccatggagtatcgtttagcattct |
5625612 |
T |
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| Q |
281 |
tcaaattataattattacctattagttgtgaggaattgtcataaatatatagagaagtattgacttgaaaatagtatgtaggttatttc |
369 |
Q |
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| T |
5625613 |
tcaaattataattattacctattggttgtgaggaattgtcataaatatatagagaagtattgacttgaaaatagtatgtaggttatttc |
5625701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 5625313 - 5625377
Alignment:
| Q |
22 |
agaacattgagagagaagatagaaaaggaatcctacggttgaaaagaatgaagattcaaaagacc |
86 |
Q |
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| T |
5625313 |
agaacattgagagagaagatagaaaaggaatcctacggttgaaaagaatgaagattcaagagacc |
5625377 |
T |
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