View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_46 (Length: 379)
Name: NF16378_high_46
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 39180143 - 39180490
Alignment:
| Q |
19 |
aaagatatatgacagtttaccgttactattcattacttattaccagtaattaattagaataacagcatgtcaccattatatcataagcagccggcaggca |
118 |
Q |
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| T |
39180143 |
aaagatatatgacagtttaccgttactattcattacttattaccagtaattaattagaataacagcatgtcaccattatatcataagcagccggcaggca |
39180242 |
T |
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| Q |
119 |
caacatttacagaatatgcttgtaattg-tttcacaatttttaacgtggaaacaaaatttaatagaaaaagtagatataaaggaatgtaagacattttca |
217 |
Q |
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| T |
39180243 |
caacatttacagaatatgcttgtaattgttttcacaattttgaacgtggaaacaaaatttaatagaaaaagtagatataaaggaatgtaagactttttca |
39180342 |
T |
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| Q |
218 |
acatctgattaattatatagaaaagtgagaataaaataaaataagtcactaatannnnnnnnnngataaaataaaaattaaagtgaactatatatttcta |
317 |
Q |
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| T |
39180343 |
acatctgattaattatatagaaaagtgagaataaaataaaataagtcactaatattttttttttgataaaataaaaattaaagtgaactatatatttcta |
39180442 |
T |
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| Q |
318 |
cagttcagtttccggcgctgctactatagcttttctgtctttcatctc |
365 |
Q |
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| T |
39180443 |
cagttcagtttccggcgctgctactatagcttttctgtctttcatctc |
39180490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 362
Target Start/End: Original strand, 39221658 - 39221886
Alignment:
| Q |
123 |
atttacagaatatgcttgtaattgtttcacaatttttaacgtggaaacaaaatttaatagaaaaagtagatataaa--ggaatgtaagacattttcaaca |
220 |
Q |
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| T |
39221658 |
atttacagaatatgcttgtaactgtttcacaatttt-aatgtggaaa--aagtttaatagaaaaaatagataaaaaaaggaaagtaaaacttttttaaca |
39221754 |
T |
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| Q |
221 |
tctgattaattatatagaaaagtgagaataaaataaaataagtcactaatannnnnnnnnngataaaataaaaattaaagtgaactatatatttctacag |
320 |
Q |
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| T |
39221755 |
tcagat-------acagaaaagtgagaataaaataaa-taagtcactagtaattgttttaataaaataaaaaaattaaagtgaactatat---tctacag |
39221843 |
T |
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| Q |
321 |
ttcagtttccggcg-ctgctactatagcttttctgtctttcat |
362 |
Q |
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| T |
39221844 |
ttcagtttccggtggctgctactatagcttttcagtctttcat |
39221886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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