View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_47 (Length: 371)
Name: NF16378_high_47
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 2122019 - 2122376
Alignment:
| Q |
1 |
tatgatatccttatctttgctttctatatcacttatataattaacatgttagctacatagatctatgcaatacagtaattaaatatcatattacaaaata |
100 |
Q |
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| T |
2122019 |
tatgatatcttcatctttgctttctatatcacttatataattaacatgttagctacatagatctatgcaatacagtaattaaatatcatattacaaaata |
2122118 |
T |
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| Q |
101 |
tcaaattcatacgttctttttcctttgtttttggttggttgagaaatcactaccattttttgttgatacatataattagaaaacaagtatatacatatat |
200 |
Q |
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| T |
2122119 |
tcaaattcatacgttctttttcctttgtttttggttggttgagaaatcactaccattttttgttgatacatataattagaaaacaagtatatacatatat |
2122218 |
T |
|
| Q |
201 |
caagattaaccgtatagtttaatggcctttatatg-aaatttttatgttcttaaactaaactggaaatatttgagagctgggatatttttgatacactag |
299 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2122219 |
caagattaaccgtatagtttaatggcctttatatgaaaatttttatgttcttaaactaaactggaaatatttgagagctgggatatttttgatacactag |
2122318 |
T |
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| Q |
300 |
cacggatcaccgttgtgggtcacgtaaaaaataaatgggcatggt-gtgtgtcctttt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2122319 |
cacggatcaccgttgtgggtcacgtaaaaaataaatgggcatggtggtgtgtcctttt |
2122376 |
T |
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