View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_5 (Length: 615)

Name: NF16378_high_5
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_5
NF16378_high_5
[»] chr4 (7 HSPs)
chr4 (18-315)||(4908321-4908617)
chr4 (377-600)||(4908101-4908324)
chr4 (100-231)||(4902559-4902688)
chr4 (139-230)||(4916347-4916434)
chr4 (119-200)||(4896572-4896647)
chr4 (66-169)||(4938075-4938179)
chr4 (66-135)||(4984800-4984869)
[»] chr6 (3 HSPs)
chr6 (71-201)||(22009481-22009611)
chr6 (88-230)||(22055396-22055544)
chr6 (88-230)||(22020899-22021050)
[»] chr2 (3 HSPs)
chr2 (71-201)||(44309763-44309893)
chr2 (88-230)||(44365781-44365929)
chr2 (88-230)||(44331007-44331158)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 4908617 - 4908321
Alignment:
Q  18 agagccaatatatttttaaaactaatacaaacgatgacnnnnnnnnncacaacaaattattcactatgagaagcactcattgtttggaagaacaattctc 117  Q
    ||||||||||||||||||||||||||||||| ||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4908617 agagccaatatatttttaaaactaatacaaaggatgacaaaaaaaaa-acaacaaattattcactatgagaagcactcattgtttggaagaacaattctc 4908519  T
Q  118 aaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagtttcagcattatataaagcaatcattattgaga 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4908518 aaagggaatttagtgaacaagttgttattgaggttcaaagtgagtacaagagaagagaagtggtaagtttcagcattatataaagcaatcattattgaga 4908419  T
Q  218 acaaatagttttttgaaatatttttcgtgtacaattttatttggataatctttcgtgtagtagtggtaaggatttagttgtgtacaatattcgttgga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4908418 acaaatagttttttgaaatatttttcgtgtacaattttatttggagaatctttcgtgtagtagtggtaagaatttagttgtgtacaatattcgttgga 4908321  T

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Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 377 - 600
Target Start/End: Complemental strand, 4908324 - 4908101
Alignment:
Q  377 tggatacacttcttgcatatcctgtgttcgttacgattgaattgttggtttaaataacttataccattcggcttcttcnnnnnnntaatacccttgtgga 476  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  4908324 tggatacacttcttgcataccctgtgttcgttacgattgaattgttggtttaaataacttataccattcggcttcttcaaaaaaataatacccttgtgga 4908225  T
Q  477 tactttaattttctgatattatttactatatgtaacaataaaatgttatactaagttgtgttttaagaacattgtctaattaagagtctttcttttgaaa 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4908224 tactttaattttctgatattatttactatatgtaacaataaaatgttatactaagttgtgttttaagaacattgtctaattaagagtctttcttttgaaa 4908125  T
Q  577 tgttatactaagttatgttttatg 600  Q
    ||||||||||||||||||||||||    
T  4908124 tgttatactaagttatgttttatg 4908101  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 4902688 - 4902559
Alignment:
Q  100 tttggaagaacaattctcaaagggaatttagtgaacaagttgttgttg---aggttcaaagtgagtacaagagaagagaagtggtaagtttcagcattat 196  Q
    ||||||||| ||||| || ||||||||||| |||||||||||||||||   |||||||||||||||||||||| ||     |||||||||||| ||||||    
T  4902688 tttggaagagcaattttcgaagggaatttattgaacaagttgttgttgttgaggttcaaagtgagtacaagagtag-----tggtaagtttcaacattat 4902594  T
Q  197 ataaagcaatcattattgagaacaaatagtttttt 231  Q
    |||||| | ||||||||||||||||||||||||||    
T  4902593 ataaagaagtcattattgagaacaaatagtttttt 4902559  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 4916434 - 4916347
Alignment:
Q  139 ttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagtttcagc-attatataaagcaatcattattgagaacaaatagttttt 230  Q
    |||||||||||||||||||||||| |||||| || ||     ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4916434 ttgttgttgaggttcaaagtgagtgcaagagtagtga-----taagtttcagccattatataaagcaatcattattgagaacaaatagttttt 4916347  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 4896647 - 4896572
Alignment:
Q  119 aagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagtttcagcattatataa 200  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||     |||||||||||||||||||||||    
T  4896647 aagggaatttagtgaacaa-ttgttgttaaggttcaaagtgagtacaagagtag-----tggtaagtttcagcattatataa 4896572  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 4938179 - 4938075
Alignment:
Q  66 acaacaaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaattta--gtgaacaagttgttgttgaggttcaaagtgagta 163  Q
    |||||||||||||   | |||||||||||||||||| | ||||||||||||| |||| ||||||  | ||| |  ||||||||||||||||||||||| |    
T  4938179 acaacaaattattatttgtgagaagcactcattgttag-aagaacaattctcgaaggaaatttatagcgaagagtttgttgttgaggttcaaagtgagga 4938081  T
Q  164 caagag 169  Q
    ||||||    
T  4938080 caagag 4938075  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 4984869 - 4984800
Alignment:
Q  66 acaacaaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaac 135  Q
    |||||||| |||||  | ||| || |||| |||||||||||||||| |||| ||||||| ||||||||||    
T  4984869 acaacaaaatattctttgtgataaacacttattgtttggaagaacatttcttaaagggagtttagtgaac 4984800  T

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Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 22009611 - 22009481
Alignment:
Q  71 aaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagaga 170  Q
    |||||||||  |||||||||||||| ||||| ||||||||||  |||||||||||||||||||| |  ||||||||||| |||||  ||||||||||||     
T  22009611 aaattattctttatgagaagcactcgttgtt-ggaagaacaacactcaaagggaatttagtgaagagtttgttgttgagattcaatatgagtacaagagg 22009513  T
Q  171 agagaagtggtaagtttcag-cattatataaa 201  Q
     ||| ||||||||||||||| |||||||||||    
T  22009512 tgaggagtggtaagtttcagccattatataaa 22009481  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 22055544 - 22055396
Alignment:
Q  88 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagttt 187  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |  ||||||||||| ||||| |||||||||||||  ||| ||||||||||||    
T  22055544 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaagttt 22055446  T
Q  188 cag-cattatataaagca------atcattattgagaacaaatagttttt 230  Q
    ||| ||||||||||||||      |||| |||||||||||||||||||||    
T  22055445 cagccattatataaagcaatcaatatcaatattgagaacaaatagttttt 22055396  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 22021050 - 22020899
Alignment:
Q  88 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaag---ttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaag 184  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |||   ||||||||||| ||||| |||||||||||||  ||| |||||||||    
T  22021050 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaag 22020952  T
Q  185 tttcag-cattatataaagca------atcattattgagaacaaatagttttt 230  Q
    |||| | ||||||||||||||      |||| |||||||||||||||||||||    
T  22020951 tttctgccattatataaagcaatcaatatcaatattgagaacaaatagttttt 22020899  T

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Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 44309893 - 44309763
Alignment:
Q  71 aaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagaga 170  Q
    |||||||||  |||||||||||||| ||||| ||||||||||  |||||||||||||||||||| |  ||||||||||| |||||  ||||||||||||     
T  44309893 aaattattctttatgagaagcactcgttgtt-ggaagaacaacactcaaagggaatttagtgaagagtttgttgttgagattcaatatgagtacaagagg 44309795  T
Q  171 agagaagtggtaagtttcag-cattatataaa 201  Q
     ||| ||||||||||||||| |||||||||||    
T  44309794 tgaggagtggtaagtttcagccattatataaa 44309763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 44365929 - 44365781
Alignment:
Q  88 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagttt 187  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |  ||||||||||| ||||| |||||||||||||  ||| ||||||||||||    
T  44365929 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaagttt 44365831  T
Q  188 cag-cattatataaagca------atcattattgagaacaaatagttttt 230  Q
    ||| ||||||||||||||      |||| |||||||||||||||||||||    
T  44365830 cagccattatataaagcaatcaatatcaatattgagaacaaatagttttt 44365781  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 44331158 - 44331007
Alignment:
Q  88 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaag---ttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaag 184  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |||   ||||||||||| ||||| |||||||||||||  ||| |||||||||    
T  44331158 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaag 44331060  T
Q  185 tttcag-cattatataaagca------atcattattgagaacaaatagttttt 230  Q
    |||| | ||||||||||||||      |||| |||||||||||||||||||||    
T  44331059 tttctgccattatataaagcaatcaatatcaatattgagaacaaatagttttt 44331007  T

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