View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_high_50 (Length: 355)
Name: NF16378_high_50
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_50 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 114 - 329
Target Start/End: Complemental strand, 9546232 - 9546017
Alignment:
| Q |
114 |
gtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcacaagaaaaataaacaagttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9546232 |
gtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcacaagaaaaataaacaagttg |
9546133 |
T |
|
| Q |
214 |
cagaaagtggtggtgattattcaatttcacaacaacatgaaaaaattaacattgnnnnnnntatcaatgttactgaaaagaaaattcatgaatgtccaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9546132 |
cagaaagtggtggtgattattcaatttcacaacatcatgaaaaaattaacattgaaaaaaatatcaatgttagtgaaaagaaaattcatgaatgtccaat |
9546033 |
T |
|
| Q |
314 |
ttgttttagagaattt |
329 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9546032 |
ttgttttagagaattt |
9546017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University