View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_high_52 (Length: 350)
Name: NF16378_high_52
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 26084991 - 26084672
Alignment:
| Q |
17 |
attcttgaacccgagattggcaaatttattagagaaaatagcggttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084991 |
attcttgaacccgagattggcaaatttattagagaaaatcgcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgag |
26084892 |
T |
|
| Q |
117 |
gtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
26084891 |
gtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaaattttgtgaatctaataaagtcccat |
26084792 |
T |
|
| Q |
217 |
tttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaattttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084791 |
tttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaattttt |
26084692 |
T |
|
| Q |
317 |
gcagttgggatatagtgttc |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26084691 |
gcagttgggatatagtgttc |
26084672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 26120548 - 26120234
Alignment:
| Q |
22 |
tgaacccgagattggcaaatttattagagaaaatagcggttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||| |
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|
| T |
26120548 |
tgaacccgagattggcaaatttattagagaaaatcgcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaagagatcctcgagatctg |
26120449 |
T |
|
| Q |
122 |
gttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||| |
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|
| T |
26120448 |
gttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaatcaagtcccattttac |
26120349 |
T |
|
| Q |
222 |
caaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagt |
321 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| | || ||||| ||||||||||||||||||||||||| |
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|
| T |
26120348 |
aaaagagacccggataatggtattgatactgttggaaaaattccaaacggcgaggctgtctccagtctcaaattccgtattctaagagaatttttgcagt |
26120249 |
T |
|
| Q |
322 |
tgggatatagtgttc |
336 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
26120248 |
tgggatacagtgttc |
26120234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 26097261 - 26096947
Alignment:
| Q |
22 |
tgaacccgagattggcaaatttattagagaaaatagcggttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctg |
121 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
26097261 |
tgaacccaagattggcaaagatattagagaaaatcgcagttaaacgagagattatagttacccttgcaaactcaaatgtgaaggagatcctcgaggtctg |
26097162 |
T |
|
| Q |
122 |
gttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
26097161 |
gttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaataaagtcccattttac |
26097062 |
T |
|
| Q |
222 |
caaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagt |
321 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||||||| ||||| | |||||||||| ||| ||||||| ||||||||||||||||||||||| |
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|
| T |
26097061 |
caaagagacccggacaatggttttgatactgttggaaaaatggtcaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagt |
26096962 |
T |
|
| Q |
322 |
tgggatatagtgttc |
336 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26096961 |
tgggatatagtgttc |
26096947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 26065261 - 26064947
Alignment:
| Q |
22 |
tgaacccgagattggcaaatttattagagaaaatagcggttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctg |
121 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| || ||||||| ||||||||||||| ||||||||||||| ||||| |||| || || || ||||| |
|
|
| T |
26065261 |
tgaacccgagattggcaaatatattagataaaatcgcagttaaacaagagatcatagttgcccttgcaaactccaatgttaaggagatcctggaagtctg |
26065162 |
T |
|
| Q |
122 |
gttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttac |
221 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
26065161 |
gttcactaatatcaagagagttggtatatctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaattgaatcaagtcccattttac |
26065062 |
T |
|
| Q |
222 |
caaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagt |
321 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
26065061 |
aaaagagacccggataatggtattgatgctgttggaaaaagaggaaagagaacggctgtctccgggcttaaatttcgtattctaagggaatttttgcagc |
26064962 |
T |
|
| Q |
322 |
tgggatatagtgttc |
336 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
26064961 |
tgggatatagcgttc |
26064947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 26127205 - 26126891
Alignment:
| Q |
22 |
tgaacccgagattggcaaatttattagagaaaatagcggttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || ||||||||||||||| ||||||||||||| ||||| |||| || ||||||||||| |
|
|
| T |
26127205 |
tgaacccgagattggcaaatttattagagaaaattgcagtaaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctg |
26127106 |
T |
|
| Q |
122 |
gttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttac |
221 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| |||| |||||||||| ||||||||||| |||||| |
|
|
| T |
26127105 |
gttcaccaatatcaagagagtcggtatacctaattatttagttgttgccttagacgatgaaatttcaaagttttgtgaatcaaataaagtcccgttttac |
26127006 |
T |
|
| Q |
222 |
caaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagt |
321 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| | | | ||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26127005 |
aaaagagacccggatgatgctattgatactgttggaaaaataggagggagagcggctgtctctgggcttaaatttcgtattttaagagaatttttgcagt |
26126906 |
T |
|
| Q |
322 |
tgggatatagtgttc |
336 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
26126905 |
tgggatatagcgttc |
26126891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 26036605 - 26036299
Alignment:
| Q |
30 |
agattggcaaatttattagagaaaatagcggttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcacca |
129 |
Q |
| |
|
||||||||||| |||| |||||||| | |||||||||||||||||||| | |||||||| || |||||||||| ||| | |||||||||||| | | |
|
|
| T |
26036605 |
agattggcaaagatattggagaaaatctcagttaaacgagagatcatagtagcacttgcaaattccaatgtgaaggagatgttagaggtctggttctcaa |
26036506 |
T |
|
| Q |
130 |
atatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccattttaccaaagaga |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
26036505 |
atatcaagagagttggtatatctaattatctagttgttgctttagacgatgagatttcaaaattttgtgaaacaaatcaagtcccattttacaaaagaga |
26036406 |
T |
|
| Q |
230 |
cccggataatgatattgatactgttggaaaaattccaaacggtggg------gctgtctccgggcttaaatttcgtattctaagagaatttttgcagttg |
323 |
Q |
| |
|
||| ||| ||| |||||| || |||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26036405 |
cccagatgatggtattgacaccattggaaaa----caa--ggagggaaccatgctgtctccgggcttaaatttcgtattctaagagaatttttgcagttg |
26036312 |
T |
|
| Q |
324 |
ggatatagtgttc |
336 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
26036311 |
ggatatggtgttc |
26036299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
115 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
175 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
|
|
| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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