View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_55 (Length: 341)
Name: NF16378_high_55
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 18221178 - 18221491
Alignment:
| Q |
18 |
actgcatcataccagagaacttgatctcagacaaacatgaaccctgcttgggaaccaaactagtagcggcatcattgataactgggctcttaggaggaga |
117 |
Q |
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| T |
18221178 |
actgcatcataccagagaacttgatctcagacaaacatgaaccctgcttgggaaccaaactagtagcagcatcattgataactgggctcttaggaggaga |
18221277 |
T |
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| Q |
118 |
ggcccagaagctccatgagtttcctttctctgcaaattcattagctgagatgcttctacaaagtgttttgattgcaaattcgattcccatcacgtatttc |
217 |
Q |
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| T |
18221278 |
ggcccagaagctccatgagtttcctttctctgcaaattcattagctgagatgcttctacaaagtgttttgattgcaaattcgattcccatcacgtatttc |
18221377 |
T |
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| Q |
218 |
tcgtcaagtgtagggattttcttcccctctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactt |
317 |
Q |
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| T |
18221378 |
tcgtcaagtgtagggattttcttcccctctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactt |
18221477 |
T |
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| Q |
318 |
tttgctcccctttg |
331 |
Q |
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| T |
18221478 |
tttgctcccctttg |
18221491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 43012893 - 43013060
Alignment:
| Q |
18 |
actgcatcataccagagaacttgatctcagacaaacatgaaccctgcttgggaaccaaactagtagcggcatcattgataactgggctcttaggaggaga |
117 |
Q |
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|||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
43012893 |
actgcaccataccagtgaatttgatctcagaccaacatgaaccctgcttgggaaccaaactagtagcagcatcattgataactgggctcataggaggaga |
43012992 |
T |
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| Q |
118 |
ggcccagaagctccatgagtttcctttctctgcaaattcattagctgagatgcttctacaaagtgttt |
185 |
Q |
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| T |
43012993 |
gacccaaaaactccatgagtttcctttctcagcaaattcgttagctgagatgcttctacagagtgttt |
43013060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 331
Target Start/End: Original strand, 43013060 - 43013146
Alignment:
| Q |
245 |
tctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttg |
331 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
43013060 |
tctggctttccaaagcattgatctttaaagtgagtgctaagagatttgaggcttggataccttagagatacttcctgctcccatttg |
43013146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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