View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_58 (Length: 336)
Name: NF16378_high_58
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 111 - 317
Target Start/End: Complemental strand, 31364068 - 31363862
Alignment:
| Q |
111 |
tgcatgcaatctacggtgaaactattacaaaaatgaaaaatatacgatataatcgaatagatcatccaaaaataaatggaccataggacacatgcaaatt |
210 |
Q |
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| T |
31364068 |
tgcatgcaatctacggtgaaactattacaaaaatgaaaaatatacgatataatcgaatagatcatccaaaaagaaatggaccataggacacatgcaaatt |
31363969 |
T |
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| Q |
211 |
ttccaaaaattaaatctcaatgaccattttgtctaagacaaaacacgagacctatcttgcatagtctttgtcaatgaaaccttttgtgtagctcaagttt |
310 |
Q |
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| T |
31363968 |
ttccaaaaattaaatctcaatgaccattttgtctaggacaaaacacgagacctatcttgcatagtctttgtcaatgaaaccttttgtgtagctcaagttt |
31363869 |
T |
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| Q |
311 |
cttggtg |
317 |
Q |
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||||||| |
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| T |
31363868 |
cttggtg |
31363862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 31364453 - 31364339
Alignment:
| Q |
7 |
atgaattcatatggtagta-taagcacaactaattctggtcgctggccaatatgctttctagaaacatgaaagtgctcatacctgaattgcgtaggacat |
105 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31364453 |
atgaattcatatggtagtactaagcacaactaattctggtcgctgcccaatatgctttctagaaacatgaaagtgttcatacctgaattgcgtaggacat |
31364354 |
T |
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| Q |
106 |
agccatgcatgcaat |
120 |
Q |
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| T |
31364353 |
agccatgcatgcaat |
31364339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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