View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_64 (Length: 315)
Name: NF16378_high_64
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 36087594 - 36087898
Alignment:
| Q |
15 |
aatactattaaatatcttccactaaccatacaagagtagttaaaaatgaaattgaagaattgacttcgaactgggcaagatcactcgtgatggttcgtga |
114 |
Q |
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| T |
36087594 |
aatactattaaatatcttccactaaccatacaagagtagttaaaaatgaaattgaagaattgacttccaactgggcaagatcactcgtgatggttcgtga |
36087693 |
T |
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| Q |
115 |
gactgattgtcatgataaaaaccatttcgcattgaaaattgtctccttaaagctagtttaccgctctcgttgtttccaccccagccccaccaaaatgaat |
214 |
Q |
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| T |
36087694 |
gactgattgtcacgataaaaaccatttcccattgaaaattgtctccttaaagctagtttaccgctctcattgtttccaccccagccccaccaaaatgaat |
36087793 |
T |
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| Q |
215 |
tcacgagtttctgaatctcatcccctaaataccgaggactaagaaaaatactcatgtac----tatgtaggaatagattgtatcatcaacttgatcatca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
36087794 |
tcacgagtttctgaatctcatcccctaaataccgaggactaagaaaaatactcatgtactatatatgtaggaatagattgcatcatcaacttgatcatca |
36087893 |
T |
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| Q |
311 |
cttct |
315 |
Q |
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||||| |
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| T |
36087894 |
cttct |
36087898 |
T |
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