View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_65 (Length: 315)
Name: NF16378_high_65
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 137 - 295
Target Start/End: Original strand, 16791184 - 16791341
Alignment:
| Q |
137 |
gtctatggcaacttcatgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatcaacatgtcatct |
236 |
Q |
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| T |
16791184 |
gtctatggcaacttcttgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatc-acatgtcattt |
16791282 |
T |
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| Q |
237 |
tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcatttgaa |
295 |
Q |
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| T |
16791283 |
tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcacttgaa |
16791341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16790996 - 16791136
Alignment:
| Q |
1 |
aacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataat---tgtaatttaaatact |
97 |
Q |
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| T |
16790996 |
aacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaatgtaatttaaatact |
16791095 |
T |
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| Q |
98 |
ttagtggcaagacttcaccttcgagaacaataaaggtcagt |
138 |
Q |
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| T |
16791096 |
ttagtggcaagacttcaccttcaagaacaataaaggtcagt |
16791136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 16792911 - 16793045
Alignment:
| Q |
4 |
aaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata---attgtaatttaaatacttta |
100 |
Q |
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| T |
16792911 |
aaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatttaaatacttta |
16793010 |
T |
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| Q |
101 |
gtggcaagacttcaccttcgagaacaataaaggtc |
135 |
Q |
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| T |
16793011 |
gtggcaagacttcgccttcgagaacaataaaggtc |
16793045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16617274 - 16617353
Alignment:
| Q |
1 |
aacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
80 |
Q |
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| T |
16617274 |
aacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata |
16617353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 16629612 - 16629734
Alignment:
| Q |
15 |
gcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaatttaaatactttagtggcaagact |
111 |
Q |
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| T |
16629612 |
gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatttagttcaaacactttagtggcgagact |
16629711 |
T |
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| Q |
112 |
tcaccttcgagaacaataaaggt |
134 |
Q |
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| T |
16629712 |
ccaccttcgggactaataaaggt |
16629734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 16638493 - 16638615
Alignment:
| Q |
15 |
gcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaatttaaatactttagtggcaagact |
111 |
Q |
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| T |
16638493 |
gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatttagttcaaacactttagtggcgagact |
16638592 |
T |
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| Q |
112 |
tcaccttcgagaacaataaaggt |
134 |
Q |
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| T |
16638593 |
ccaccttcgggactaataaaggt |
16638615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 16629299 - 16629369
Alignment:
| Q |
10 |
gcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
80 |
Q |
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| T |
16629299 |
gcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16629369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 16638180 - 16638250
Alignment:
| Q |
10 |
gcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
80 |
Q |
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| T |
16638180 |
gcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16638250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38877751 - 38877856
Alignment:
| Q |
1 |
aacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaatttaaatact |
97 |
Q |
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| T |
38877751 |
aacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaaattaaacact |
38877850 |
T |
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| Q |
98 |
ttagtg |
103 |
Q |
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|||||| |
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| T |
38877851 |
ttagtg |
38877856 |
T |
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