View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_67 (Length: 302)
Name: NF16378_high_67
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_67 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 52343795 - 52344083
Alignment:
| Q |
1 |
gcgtgcactat-actactaattaattacctgatagggtaaccatttcttcggctgtgaaacctttcttggcaaaagcagtgataaggccatcaagattca |
99 |
Q |
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| T |
52343795 |
gcgtgcactattactactaattaattacctgatagggtaaccatttcttcggctgtgaaacctttcttggcaaaagcagtgataaggccatcaagattca |
52343894 |
T |
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| Q |
100 |
aaaagggagcaggtaacgtattagcttcacttaagtttgctgttgttgaatctcttctgcctaatagtacattccatctttgtccaccaagctatacata |
199 |
Q |
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| T |
52343895 |
aaaagggagcaggtaacgtattagcttcacttaagtttgctgttgttgaatctcttctgcctaatagtacattccatctttgtccaccaagctatacata |
52343994 |
T |
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| Q |
200 |
atttaatcttagttattatcaaattaattaataagaatattgtatag---aaatgtgtttgtaatgtatatatttacctcagcaacacc |
285 |
Q |
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| T |
52343995 |
atttaatcttagttattatcaaattaattaataagaatattgtatagatcaaatgtgtttgtaatgtatatatttacctcagcaacacc |
52344083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 9155341 - 9155405
Alignment:
| Q |
131 |
taagtttgctgttgttgaatctcttctgcctaatagtacattccatctttgtccaccaagctata |
195 |
Q |
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| T |
9155341 |
taagcttgctgttgttgaatctcttctgcctaatggtacattccagctttgtccgccaagctata |
9155405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 26951617 - 26951552
Alignment:
| Q |
24 |
ttacctgatagggtaaccatttcttcggctgtgaaacctttcttggcaaaagcagtgataaggcca |
89 |
Q |
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| T |
26951617 |
ttacctgataaagcaaccatttctttgggtgtgaaacctttattgttaaaagcattgataaggcca |
26951552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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